miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15865 5' -55 NC_004065.1 + 41429 0.66 0.981781
Target:  5'- cGACGaccGGCUCGAGAUGGacguccuuuugGGCCGGg -3'
miRNA:   3'- -CUGCca-CUGAGCUCUGCUca---------CUGGCC- -5'
15865 5' -55 NC_004065.1 + 23607 0.71 0.865859
Target:  5'- aGGCGGUGAggCGggcAGGCGGGUGGaCGGg -3'
miRNA:   3'- -CUGCCACUgaGC---UCUGCUCACUgGCC- -5'
15865 5' -55 NC_004065.1 + 135155 0.66 0.980169
Target:  5'- cGACGGgGACgUCGAugacGACGAGgGACUGc -3'
miRNA:   3'- -CUGCCaCUG-AGCU----CUGCUCaCUGGCc -5'
15865 5' -55 NC_004065.1 + 139633 0.66 0.978007
Target:  5'- aGCGGUGGCgugUCGAcGACGGGgaagGACuCGu -3'
miRNA:   3'- cUGCCACUG---AGCU-CUGCUCa---CUG-GCc -5'
15865 5' -55 NC_004065.1 + 117219 0.66 0.978007
Target:  5'- uGGCGGggacgGACgucgCGAG-CGAcaGACCGGu -3'
miRNA:   3'- -CUGCCa----CUGa---GCUCuGCUcaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 229347 0.66 0.977782
Target:  5'- gGGCGGUcGCUCGAccagcgaGCGGGUGcucgcuacgcgcgGCCGGa -3'
miRNA:   3'- -CUGCCAcUGAGCUc------UGCUCAC-------------UGGCC- -5'
15865 5' -55 NC_004065.1 + 184875 0.67 0.97317
Target:  5'- cGGCGG-GACgcCGGGaACGAGagagGAUCGGg -3'
miRNA:   3'- -CUGCCaCUGa-GCUC-UGCUCa---CUGGCC- -5'
15865 5' -55 NC_004065.1 + 71936 0.7 0.879878
Target:  5'- uGACGGUGGCcuggUCgGAGGCGAcgccgccgGUGgaGCCGGg -3'
miRNA:   3'- -CUGCCACUG----AG-CUCUGCU--------CAC--UGGCC- -5'
15865 5' -55 NC_004065.1 + 67381 0.7 0.89937
Target:  5'- uGACGGUcGGCgugcacaCGAGAgGGGUGAUCGu -3'
miRNA:   3'- -CUGCCA-CUGa------GCUCUgCUCACUGGCc -5'
15865 5' -55 NC_004065.1 + 225132 0.7 0.907811
Target:  5'- uGAUGG--GCUCGGGACGcggacgcuccuccugGGUGACCGa -3'
miRNA:   3'- -CUGCCacUGAGCUCUGC---------------UCACUGGCc -5'
15865 5' -55 NC_004065.1 + 6677 0.69 0.916936
Target:  5'- cGugGGaagguacgUGGCUgGuGGACGGGUGGCCGu -3'
miRNA:   3'- -CugCC--------ACUGAgC-UCUGCUCACUGGCc -5'
15865 5' -55 NC_004065.1 + 164233 0.69 0.916936
Target:  5'- cGGCGGUGAagUCGGGAucUGAGgGAgCGGg -3'
miRNA:   3'- -CUGCCACUg-AGCUCU--GCUCaCUgGCC- -5'
15865 5' -55 NC_004065.1 + 62370 0.69 0.932526
Target:  5'- cGGCGGUGGCggCGGGGguGGUGGCggCGGg -3'
miRNA:   3'- -CUGCCACUGa-GCUCUgcUCACUG--GCC- -5'
15865 5' -55 NC_004065.1 + 162329 0.68 0.937282
Target:  5'- cGACGGUG-CUCGAcccccucauCGAGccgaucgGACCGGg -3'
miRNA:   3'- -CUGCCACuGAGCUcu-------GCUCa------CUGGCC- -5'
15865 5' -55 NC_004065.1 + 50002 0.68 0.954122
Target:  5'- cACGGUG---CGAGACGAGU--CCGGg -3'
miRNA:   3'- cUGCCACugaGCUCUGCUCAcuGGCC- -5'
15865 5' -55 NC_004065.1 + 71739 0.67 0.964536
Target:  5'- cGACGGUGACgc--GGCGcuaccggucGGUGACCGu -3'
miRNA:   3'- -CUGCCACUGagcuCUGC---------UCACUGGCc -5'
15865 5' -55 NC_004065.1 + 88907 0.67 0.964536
Target:  5'- cGACGGcgaagcUGACg-GAGACGAGcGAgCGGc -3'
miRNA:   3'- -CUGCC------ACUGagCUCUGCUCaCUgGCC- -5'
15865 5' -55 NC_004065.1 + 75358 0.67 0.967605
Target:  5'- cGACGGUGcC-CGAGAgGAGcaGCUGGa -3'
miRNA:   3'- -CUGCCACuGaGCUCUgCUCacUGGCC- -5'
15865 5' -55 NC_004065.1 + 68241 0.67 0.967605
Target:  5'- cGGCGGUGACga-GGACG---GACCGGc -3'
miRNA:   3'- -CUGCCACUGagcUCUGCucaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 184918 0.67 0.97317
Target:  5'- --gGGUGGCUCGG---GAGcGGCCGGg -3'
miRNA:   3'- cugCCACUGAGCUcugCUCaCUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.