miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15865 5' -55 NC_004065.1 + 140565 0.72 0.827508
Target:  5'- aGCGGcgGGCUgGAGugGAGUGACg-- -3'
miRNA:   3'- cUGCCa-CUGAgCUCugCUCACUGgcc -5'
15865 5' -55 NC_004065.1 + 74130 0.74 0.720548
Target:  5'- cACGaG-GACgUCGAGGCGGGUGcCCGGg -3'
miRNA:   3'- cUGC-CaCUG-AGCUCUGCUCACuGGCC- -5'
15865 5' -55 NC_004065.1 + 162329 0.68 0.937282
Target:  5'- cGACGGUG-CUCGAcccccucauCGAGccgaucgGACCGGg -3'
miRNA:   3'- -CUGCCACuGAGCUcu-------GCUCa------CUGGCC- -5'
15865 5' -55 NC_004065.1 + 200789 0.68 0.941373
Target:  5'- cGGCGGUGGCgggcgacggcgucUCGGcGCGGG-GAUCGGa -3'
miRNA:   3'- -CUGCCACUG-------------AGCUcUGCUCaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 117219 0.66 0.978007
Target:  5'- uGGCGGggacgGACgucgCGAG-CGAcaGACCGGu -3'
miRNA:   3'- -CUGCCa----CUGa---GCUCuGCUcaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 229347 0.66 0.977782
Target:  5'- gGGCGGUcGCUCGAccagcgaGCGGGUGcucgcuacgcgcgGCCGGa -3'
miRNA:   3'- -CUGCCAcUGAGCUc------UGCUCAC-------------UGGCC- -5'
15865 5' -55 NC_004065.1 + 184875 0.67 0.97317
Target:  5'- cGGCGG-GACgcCGGGaACGAGagagGAUCGGg -3'
miRNA:   3'- -CUGCCaCUGa-GCUC-UGCUCa---CUGGCC- -5'
15865 5' -55 NC_004065.1 + 184918 0.67 0.97317
Target:  5'- --gGGUGGCUCGG---GAGcGGCCGGg -3'
miRNA:   3'- cugCCACUGAGCUcugCUCaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 68241 0.67 0.967605
Target:  5'- cGGCGGUGACga-GGACG---GACCGGc -3'
miRNA:   3'- -CUGCCACUGagcUCUGCucaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 75358 0.67 0.967605
Target:  5'- cGACGGUGcC-CGAGAgGAGcaGCUGGa -3'
miRNA:   3'- -CUGCCACuGaGCUCUgCUCacUGGCC- -5'
15865 5' -55 NC_004065.1 + 88907 0.67 0.964536
Target:  5'- cGACGGcgaagcUGACg-GAGACGAGcGAgCGGc -3'
miRNA:   3'- -CUGCC------ACUGagCUCUGCUCaCUgGCC- -5'
15865 5' -55 NC_004065.1 + 71739 0.67 0.964536
Target:  5'- cGACGGUGACgc--GGCGcuaccggucGGUGACCGu -3'
miRNA:   3'- -CUGCCACUGagcuCUGC---------UCACUGGCc -5'
15865 5' -55 NC_004065.1 + 50002 0.68 0.954122
Target:  5'- cACGGUG---CGAGACGAGU--CCGGg -3'
miRNA:   3'- cUGCCACugaGCUCUGCUCAcuGGCC- -5'
15865 5' -55 NC_004065.1 + 72460 0.68 0.945712
Target:  5'- uACGGUacGACgagCGAGACGGuGUcggcgcggcugaaGACCGGg -3'
miRNA:   3'- cUGCCA--CUGa--GCUCUGCU-CA-------------CUGGCC- -5'
15865 5' -55 NC_004065.1 + 58600 0.68 0.944862
Target:  5'- cGACGGcgGAgUCGAGAUcgacgcgcgcggcgGAGUcGCCGGu -3'
miRNA:   3'- -CUGCCa-CUgAGCUCUG--------------CUCAcUGGCC- -5'
15865 5' -55 NC_004065.1 + 55652 0.68 0.941817
Target:  5'- aGACGG--GCUCGAGuCGGcacUGGCCGGu -3'
miRNA:   3'- -CUGCCacUGAGCUCuGCUc--ACUGGCC- -5'
15865 5' -55 NC_004065.1 + 138990 0.75 0.642757
Target:  5'- cGCGGUGcuacgaGCUCGGGACG-GUGGCCa- -3'
miRNA:   3'- cUGCCAC------UGAGCUCUGCuCACUGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.