miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15866 3' -57.1 NC_004065.1 + 127735 0.66 0.954594
Target:  5'- cUCUCgaCGcGUCC-UCGUCCGAgagGGUGAa- -3'
miRNA:   3'- -AGAG--GC-CAGGcAGCAGGCU---CCACUac -5'
15866 3' -57.1 NC_004065.1 + 33244 0.66 0.942488
Target:  5'- -gUCUGGUguUCGUCG-CUGAGGUGGc- -3'
miRNA:   3'- agAGGCCA--GGCAGCaGGCUCCACUac -5'
15866 3' -57.1 NC_004065.1 + 163146 0.66 0.938027
Target:  5'- gUCUCCGGacagcggCuCGUCGUCCGgaucggcggcccAGG-GAUGc -3'
miRNA:   3'- -AGAGGCCa------G-GCAGCAGGC------------UCCaCUAC- -5'
15866 3' -57.1 NC_004065.1 + 167724 0.66 0.933351
Target:  5'- uUCUCUGGUCUGUCGacCCGcucucuucaAGGUcGAUa -3'
miRNA:   3'- -AGAGGCCAGGCAGCa-GGC---------UCCA-CUAc -5'
15866 3' -57.1 NC_004065.1 + 112387 0.67 0.900751
Target:  5'- --gUCGGUCCGUCGUaaCGAcGGUGgAUGa -3'
miRNA:   3'- agaGGCCAGGCAGCAg-GCU-CCAC-UAC- -5'
15866 3' -57.1 NC_004065.1 + 133516 0.67 0.900751
Target:  5'- -gUCCGaGUCgGUCG-CCGAGaUGGUGa -3'
miRNA:   3'- agAGGC-CAGgCAGCaGGCUCcACUAC- -5'
15866 3' -57.1 NC_004065.1 + 224046 0.67 0.900751
Target:  5'- aUCUgCGGgUCGUCGUCCGgcAGGUcgcuGAUGc -3'
miRNA:   3'- -AGAgGCCaGGCAGCAGGC--UCCA----CUAC- -5'
15866 3' -57.1 NC_004065.1 + 484 0.68 0.894568
Target:  5'- cCUCCGGgccgcgcgCCG-CGUCCGcgggaaggcgGGGUGAg- -3'
miRNA:   3'- aGAGGCCa-------GGCaGCAGGC----------UCCACUac -5'
15866 3' -57.1 NC_004065.1 + 18312 0.68 0.874787
Target:  5'- ---aCGGUCCGUCuucgguucUCCGAGGaGAUGg -3'
miRNA:   3'- agagGCCAGGCAGc-------AGGCUCCaCUAC- -5'
15866 3' -57.1 NC_004065.1 + 30694 0.71 0.733945
Target:  5'- --gCUGGUCCGUCGcgacgUCGAGGUGGc- -3'
miRNA:   3'- agaGGCCAGGCAGCa----GGCUCCACUac -5'
15866 3' -57.1 NC_004065.1 + 185185 0.73 0.657359
Target:  5'- gCUCCGGcCCGUgucgcUGUCCGugucgcGGUGGUGg -3'
miRNA:   3'- aGAGGCCaGGCA-----GCAGGCu-----CCACUAC- -5'
15866 3' -57.1 NC_004065.1 + 181612 0.73 0.608642
Target:  5'- cCUCCGucaugugcUCCGUCGUCCGAGGUu--- -3'
miRNA:   3'- aGAGGCc-------AGGCAGCAGGCUCCAcuac -5'
15866 3' -57.1 NC_004065.1 + 66821 1.08 0.004921
Target:  5'- uUCUCCGGUCCGUCGUCCGAGGUGAUGu -3'
miRNA:   3'- -AGAGGCCAGGCAGCAGGCUCCACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.