Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15866 | 3' | -57.1 | NC_004065.1 | + | 66821 | 1.08 | 0.004921 |
Target: 5'- uUCUCCGGUCCGUCGUCCGAGGUGAUGu -3' miRNA: 3'- -AGAGGCCAGGCAGCAGGCUCCACUAC- -5' |
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15866 | 3' | -57.1 | NC_004065.1 | + | 185185 | 0.73 | 0.657359 |
Target: 5'- gCUCCGGcCCGUgucgcUGUCCGugucgcGGUGGUGg -3' miRNA: 3'- aGAGGCCaGGCA-----GCAGGCu-----CCACUAC- -5' |
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15866 | 3' | -57.1 | NC_004065.1 | + | 181612 | 0.73 | 0.608642 |
Target: 5'- cCUCCGucaugugcUCCGUCGUCCGAGGUu--- -3' miRNA: 3'- aGAGGCc-------AGGCAGCAGGCUCCAcuac -5' |
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15866 | 3' | -57.1 | NC_004065.1 | + | 30694 | 0.71 | 0.733945 |
Target: 5'- --gCUGGUCCGUCGcgacgUCGAGGUGGc- -3' miRNA: 3'- agaGGCCAGGCAGCa----GGCUCCACUac -5' |
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15866 | 3' | -57.1 | NC_004065.1 | + | 18312 | 0.68 | 0.874787 |
Target: 5'- ---aCGGUCCGUCuucgguucUCCGAGGaGAUGg -3' miRNA: 3'- agagGCCAGGCAGc-------AGGCUCCaCUAC- -5' |
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15866 | 3' | -57.1 | NC_004065.1 | + | 484 | 0.68 | 0.894568 |
Target: 5'- cCUCCGGgccgcgcgCCG-CGUCCGcgggaaggcgGGGUGAg- -3' miRNA: 3'- aGAGGCCa-------GGCaGCAGGC----------UCCACUac -5' |
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15866 | 3' | -57.1 | NC_004065.1 | + | 133516 | 0.67 | 0.900751 |
Target: 5'- -gUCCGaGUCgGUCG-CCGAGaUGGUGa -3' miRNA: 3'- agAGGC-CAGgCAGCaGGCUCcACUAC- -5' |
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15866 | 3' | -57.1 | NC_004065.1 | + | 112387 | 0.67 | 0.900751 |
Target: 5'- --gUCGGUCCGUCGUaaCGAcGGUGgAUGa -3' miRNA: 3'- agaGGCCAGGCAGCAg-GCU-CCAC-UAC- -5' |
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15866 | 3' | -57.1 | NC_004065.1 | + | 224046 | 0.67 | 0.900751 |
Target: 5'- aUCUgCGGgUCGUCGUCCGgcAGGUcgcuGAUGc -3' miRNA: 3'- -AGAgGCCaGGCAGCAGGC--UCCA----CUAC- -5' |
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15866 | 3' | -57.1 | NC_004065.1 | + | 33244 | 0.66 | 0.942488 |
Target: 5'- -gUCUGGUguUCGUCG-CUGAGGUGGc- -3' miRNA: 3'- agAGGCCA--GGCAGCaGGCUCCACUac -5' |
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15866 | 3' | -57.1 | NC_004065.1 | + | 163146 | 0.66 | 0.938027 |
Target: 5'- gUCUCCGGacagcggCuCGUCGUCCGgaucggcggcccAGG-GAUGc -3' miRNA: 3'- -AGAGGCCa------G-GCAGCAGGC------------UCCaCUAC- -5' |
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15866 | 3' | -57.1 | NC_004065.1 | + | 167724 | 0.66 | 0.933351 |
Target: 5'- uUCUCUGGUCUGUCGacCCGcucucuucaAGGUcGAUa -3' miRNA: 3'- -AGAGGCCAGGCAGCa-GGC---------UCCA-CUAc -5' |
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15866 | 3' | -57.1 | NC_004065.1 | + | 127735 | 0.66 | 0.954594 |
Target: 5'- cUCUCgaCGcGUCC-UCGUCCGAgagGGUGAa- -3' miRNA: 3'- -AGAG--GC-CAGGcAGCAGGCU---CCACUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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