miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15866 5' -62.1 NC_004065.1 + 109936 0.66 0.761907
Target:  5'- cGCGUCCCgGGaggucaugaGUCGCCucUCCGGcGCg -3'
miRNA:   3'- aCGUAGGGaCC---------CGGCGGcuAGGCC-UG- -5'
15866 5' -62.1 NC_004065.1 + 203603 0.66 0.761907
Target:  5'- gUGC-UCUCgGaGGCCGCCGccgCCGuGGCg -3'
miRNA:   3'- -ACGuAGGGaC-CCGGCGGCua-GGC-CUG- -5'
15866 5' -62.1 NC_004065.1 + 210706 0.66 0.761015
Target:  5'- gUGCGUCCUccGGGUaggaugaCGcCCGucgCCGGACg -3'
miRNA:   3'- -ACGUAGGGa-CCCG-------GC-GGCua-GGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 147893 0.66 0.752938
Target:  5'- aGCGUCCgc--GCCGCCGGauacgucagCCGGGCg -3'
miRNA:   3'- aCGUAGGgaccCGGCGGCUa--------GGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 72679 0.66 0.752938
Target:  5'- gUGCGgcaCCUGGagaacCUGCCGAgcgacCCGGACu -3'
miRNA:   3'- -ACGUag-GGACCc----GGCGGCUa----GGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 141466 0.66 0.741139
Target:  5'- cUGCG-CCCUGggacacguGGCCGCUuucugccuggucagGGUCCuGGACg -3'
miRNA:   3'- -ACGUaGGGAC--------CCGGCGG--------------CUAGG-CCUG- -5'
15866 5' -62.1 NC_004065.1 + 143616 0.66 0.738395
Target:  5'- cUGCAUCCCUacGCCGCgGAcUCCcugaaggauuccucgGGGCg -3'
miRNA:   3'- -ACGUAGGGAccCGGCGgCU-AGG---------------CCUG- -5'
15866 5' -62.1 NC_004065.1 + 46359 0.66 0.734725
Target:  5'- --aGUCCCugggacacgaugUGGGCCaccucaGCCGGUCCcuGGACu -3'
miRNA:   3'- acgUAGGG------------ACCCGG------CGGCUAGG--CCUG- -5'
15866 5' -62.1 NC_004065.1 + 61382 0.66 0.734725
Target:  5'- cGCGUCCCUGGaaGCUGUuuccgcagCGAUCCaucauGACg -3'
miRNA:   3'- aCGUAGGGACC--CGGCG--------GCUAGGc----CUG- -5'
15866 5' -62.1 NC_004065.1 + 81654 0.66 0.734725
Target:  5'- aGCAugUCUCUGGuGUCGCUGAcgcugaCGGACc -3'
miRNA:   3'- aCGU--AGGGACC-CGGCGGCUag----GCCUG- -5'
15866 5' -62.1 NC_004065.1 + 64130 0.66 0.731965
Target:  5'- cGCAgaaagggcuucuccUCCCgcuGGCCGCCGAcCUGGuCu -3'
miRNA:   3'- aCGU--------------AGGGac-CCGGCGGCUaGGCCuG- -5'
15866 5' -62.1 NC_004065.1 + 200320 0.66 0.729197
Target:  5'- gGCAgagguaccagCCCgucGGGgCGCCGAggcucagcaaccugCCGGACu -3'
miRNA:   3'- aCGUa---------GGGa--CCCgGCGGCUa-------------GGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 6839 0.66 0.725498
Target:  5'- cUGUAUcCCCUGgaccgaggaGGaCCGUCGAUCCcGACg -3'
miRNA:   3'- -ACGUA-GGGAC---------CC-GGCGGCUAGGcCUG- -5'
15866 5' -62.1 NC_004065.1 + 82783 0.66 0.725498
Target:  5'- gGCGUCCggUGGcGCCGaCCcAUCCGGGg -3'
miRNA:   3'- aCGUAGGg-ACC-CGGC-GGcUAGGCCUg -5'
15866 5' -62.1 NC_004065.1 + 77710 0.66 0.716199
Target:  5'- cGUGUUCCU--GUCGCCGAUCCcGACg -3'
miRNA:   3'- aCGUAGGGAccCGGCGGCUAGGcCUG- -5'
15866 5' -62.1 NC_004065.1 + 204706 0.66 0.716199
Target:  5'- cGCAggaCCCUGGGaUCGCUGuguUCgUGGGCu -3'
miRNA:   3'- aCGUa--GGGACCC-GGCGGCu--AG-GCCUG- -5'
15866 5' -62.1 NC_004065.1 + 115450 0.67 0.697419
Target:  5'- gGCAcUCCgccgcgcGGGUCG-CGAUCCGGAUg -3'
miRNA:   3'- aCGUaGGGa------CCCGGCgGCUAGGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 126064 0.67 0.687954
Target:  5'- cUGCGUCUCggugaaGGucaGCCGCUGGUCCaGGAa -3'
miRNA:   3'- -ACGUAGGGa-----CC---CGGCGGCUAGG-CCUg -5'
15866 5' -62.1 NC_004065.1 + 48223 0.67 0.678447
Target:  5'- gGC-UCUUUcGGCUGCCGAUgCGGAUg -3'
miRNA:   3'- aCGuAGGGAcCCGGCGGCUAgGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 90116 0.67 0.668908
Target:  5'- ----cCCgCUGGcGCCGCCGG-CCGGAg -3'
miRNA:   3'- acguaGG-GACC-CGGCGGCUaGGCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.