Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15866 | 5' | -62.1 | NC_004065.1 | + | 143616 | 0.66 | 0.738395 |
Target: 5'- cUGCAUCCCUacGCCGCgGAcUCCcugaaggauuccucgGGGCg -3' miRNA: 3'- -ACGUAGGGAccCGGCGgCU-AGG---------------CCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 61382 | 0.66 | 0.734725 |
Target: 5'- cGCGUCCCUGGaaGCUGUuuccgcagCGAUCCaucauGACg -3' miRNA: 3'- aCGUAGGGACC--CGGCG--------GCUAGGc----CUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 64130 | 0.66 | 0.731965 |
Target: 5'- cGCAgaaagggcuucuccUCCCgcuGGCCGCCGAcCUGGuCu -3' miRNA: 3'- aCGU--------------AGGGac-CCGGCGGCUaGGCCuG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 200320 | 0.66 | 0.729197 |
Target: 5'- gGCAgagguaccagCCCgucGGGgCGCCGAggcucagcaaccugCCGGACu -3' miRNA: 3'- aCGUa---------GGGa--CCCgGCGGCUa-------------GGCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 77710 | 0.66 | 0.716199 |
Target: 5'- cGUGUUCCU--GUCGCCGAUCCcGACg -3' miRNA: 3'- aCGUAGGGAccCGGCGGCUAGGcCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 203603 | 0.66 | 0.761907 |
Target: 5'- gUGC-UCUCgGaGGCCGCCGccgCCGuGGCg -3' miRNA: 3'- -ACGuAGGGaC-CCGGCGGCua-GGC-CUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 81654 | 0.66 | 0.734725 |
Target: 5'- aGCAugUCUCUGGuGUCGCUGAcgcugaCGGACc -3' miRNA: 3'- aCGU--AGGGACC-CGGCGGCUag----GCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 82783 | 0.66 | 0.725498 |
Target: 5'- gGCGUCCggUGGcGCCGaCCcAUCCGGGg -3' miRNA: 3'- aCGUAGGg-ACC-CGGC-GGcUAGGCCUg -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 6839 | 0.66 | 0.725498 |
Target: 5'- cUGUAUcCCCUGgaccgaggaGGaCCGUCGAUCCcGACg -3' miRNA: 3'- -ACGUA-GGGAC---------CC-GGCGGCUAGGcCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 204706 | 0.66 | 0.716199 |
Target: 5'- cGCAggaCCCUGGGaUCGCUGuguUCgUGGGCu -3' miRNA: 3'- aCGUa--GGGACCC-GGCGGCu--AG-GCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 141466 | 0.66 | 0.741139 |
Target: 5'- cUGCG-CCCUGggacacguGGCCGCUuucugccuggucagGGUCCuGGACg -3' miRNA: 3'- -ACGUaGGGAC--------CCGGCGG--------------CUAGG-CCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 72679 | 0.66 | 0.752938 |
Target: 5'- gUGCGgcaCCUGGagaacCUGCCGAgcgacCCGGACu -3' miRNA: 3'- -ACGUag-GGACCc----GGCGGCUa----GGCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 109936 | 0.66 | 0.761907 |
Target: 5'- cGCGUCCCgGGaggucaugaGUCGCCucUCCGGcGCg -3' miRNA: 3'- aCGUAGGGaCC---------CGGCGGcuAGGCC-UG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 147893 | 0.66 | 0.752938 |
Target: 5'- aGCGUCCgc--GCCGCCGGauacgucagCCGGGCg -3' miRNA: 3'- aCGUAGGgaccCGGCGGCUa--------GGCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 46359 | 0.66 | 0.734725 |
Target: 5'- --aGUCCCugggacacgaugUGGGCCaccucaGCCGGUCCcuGGACu -3' miRNA: 3'- acgUAGGG------------ACCCGG------CGGCUAGG--CCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 210706 | 0.66 | 0.761015 |
Target: 5'- gUGCGUCCUccGGGUaggaugaCGcCCGucgCCGGACg -3' miRNA: 3'- -ACGUAGGGa-CCCG-------GC-GGCua-GGCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 48223 | 0.67 | 0.678447 |
Target: 5'- gGC-UCUUUcGGCUGCCGAUgCGGAUg -3' miRNA: 3'- aCGuAGGGAcCCGGCGGCUAgGCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 90116 | 0.67 | 0.668908 |
Target: 5'- ----cCCgCUGGcGCCGCCGG-CCGGAg -3' miRNA: 3'- acguaGG-GACC-CGGCGGCUaGGCCUg -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 195790 | 0.67 | 0.668908 |
Target: 5'- cGCGUCUCUGGG-CGCCG---CGGAg -3' miRNA: 3'- aCGUAGGGACCCgGCGGCuagGCCUg -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 115450 | 0.67 | 0.697419 |
Target: 5'- gGCAcUCCgccgcgcGGGUCG-CGAUCCGGAUg -3' miRNA: 3'- aCGUaGGGa------CCCGGCgGCUAGGCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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