Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15866 | 5' | -62.1 | NC_004065.1 | + | 90116 | 0.67 | 0.668908 |
Target: 5'- ----cCCgCUGGcGCCGCCGG-CCGGAg -3' miRNA: 3'- acguaGG-GACC-CGGCGGCUaGGCCUg -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 195790 | 0.67 | 0.668908 |
Target: 5'- cGCGUCUCUGGG-CGCCG---CGGAg -3' miRNA: 3'- aCGUAGGGACCCgGCGGCuagGCCUg -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 145464 | 0.68 | 0.620953 |
Target: 5'- gGCGUCgg-GGGCUGCCGGUCCa--- -3' miRNA: 3'- aCGUAGggaCCCGGCGGCUAGGccug -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 184187 | 0.68 | 0.592216 |
Target: 5'- cGCGUCCCgu-GCgGCCGGUCCGa-- -3' miRNA: 3'- aCGUAGGGaccCGgCGGCUAGGCcug -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 161761 | 0.68 | 0.592216 |
Target: 5'- gGguUCCUUcGGCCGacCCGGUCaCGGACu -3' miRNA: 3'- aCguAGGGAcCCGGC--GGCUAG-GCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 66136 | 0.68 | 0.601777 |
Target: 5'- gGCG-CgCUGGGCCGCgGA-CCGG-Cg -3' miRNA: 3'- aCGUaGgGACCCGGCGgCUaGGCCuG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 201710 | 0.68 | 0.601777 |
Target: 5'- cGUAUCggaUGaGGCCGUCGAUCCGaGAUu -3' miRNA: 3'- aCGUAGgg-AC-CCGGCGGCUAGGC-CUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 48498 | 0.68 | 0.640158 |
Target: 5'- aGCAUCaUCUGGG-CGUCGAUgCCGG-Cg -3' miRNA: 3'- aCGUAG-GGACCCgGCGGCUA-GGCCuG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 195587 | 0.68 | 0.611358 |
Target: 5'- cGCGUCCCccGGCCGUgCGAUCgUGGAg -3' miRNA: 3'- aCGUAGGGacCCGGCG-GCUAG-GCCUg -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 139910 | 0.69 | 0.544905 |
Target: 5'- cGCAUCCCccgagGGGUCgGUCGAcgaaCGGACg -3' miRNA: 3'- aCGUAGGGa----CCCGG-CGGCUag--GCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 88568 | 0.69 | 0.58268 |
Target: 5'- cGUGUCCCaGGG-CGCagaGGUCCGaGACg -3' miRNA: 3'- aCGUAGGGaCCCgGCGg--CUAGGC-CUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 78487 | 0.69 | 0.563708 |
Target: 5'- gGUGUCCUUGcGGCCcuuGCCGccGUCCaGGGCg -3' miRNA: 3'- aCGUAGGGAC-CCGG---CGGC--UAGG-CCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 151513 | 0.69 | 0.535578 |
Target: 5'- aGCGgugUUCUGaGGCCGCUGccggCCGGGCg -3' miRNA: 3'- aCGUa--GGGAC-CCGGCGGCua--GGCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 32868 | 0.7 | 0.507956 |
Target: 5'- gGCGUCCCUGGucgagaggcgcGCCGgCGAgcgucugccgCUGGGCa -3' miRNA: 3'- aCGUAGGGACC-----------CGGCgGCUa---------GGCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 205896 | 0.7 | 0.498881 |
Target: 5'- cGUcgCCCuugacggaUGGGCCGCCGAggCC-GACg -3' miRNA: 3'- aCGuaGGG--------ACCCGGCGGCUa-GGcCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 131768 | 0.7 | 0.526308 |
Target: 5'- cGCG-CCCaGGGCCGCCG-UCCcGAg -3' miRNA: 3'- aCGUaGGGaCCCGGCGGCuAGGcCUg -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 110644 | 0.71 | 0.446083 |
Target: 5'- gGUG-CgCUGGGCCaaCGAUCCGGACu -3' miRNA: 3'- aCGUaGgGACCCGGcgGCUAGGCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 188825 | 0.72 | 0.396549 |
Target: 5'- aUGUAUUCCUGGuGCCGCUuGUCCGucaGGCa -3' miRNA: 3'- -ACGUAGGGACC-CGGCGGcUAGGC---CUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 131333 | 0.74 | 0.302136 |
Target: 5'- gGCGUCCCcaugacGGGucCCGUCGAUCgGGACg -3' miRNA: 3'- aCGUAGGGa-----CCC--GGCGGCUAGgCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 68732 | 0.75 | 0.253178 |
Target: 5'- cGCAUCCUgacgGGGUCGCUG--CCGGACu -3' miRNA: 3'- aCGUAGGGa---CCCGGCGGCuaGGCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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