miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15866 5' -62.1 NC_004065.1 + 66857 0.98 0.007522
Target:  5'- aUGCAUCCCU-GGCCGCCGAUCCGGACg -3'
miRNA:   3'- -ACGUAGGGAcCCGGCGGCUAGGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 106999 0.78 0.170804
Target:  5'- gUGCAUCCCUGacgaguacguGGCCGCCaAUacCCGGACg -3'
miRNA:   3'- -ACGUAGGGAC----------CCGGCGGcUA--GGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 117116 0.78 0.18336
Target:  5'- cGCG-CCCUGGuGUCGCaccuGAUCCGGACg -3'
miRNA:   3'- aCGUaGGGACC-CGGCGg---CUAGGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 98266 0.77 0.201366
Target:  5'- gGCggCCCUGGGCgcgcgccuCGCgGAUCCGGAUc -3'
miRNA:   3'- aCGuaGGGACCCG--------GCGgCUAGGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 68732 0.75 0.253178
Target:  5'- cGCAUCCUgacgGGGUCGCUG--CCGGACu -3'
miRNA:   3'- aCGUAGGGa---CCCGGCGGCuaGGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 131333 0.74 0.302136
Target:  5'- gGCGUCCCcaugacGGGucCCGUCGAUCgGGACg -3'
miRNA:   3'- aCGUAGGGa-----CCC--GGCGGCUAGgCCUG- -5'
15866 5' -62.1 NC_004065.1 + 188825 0.72 0.396549
Target:  5'- aUGUAUUCCUGGuGCCGCUuGUCCGucaGGCa -3'
miRNA:   3'- -ACGUAGGGACC-CGGCGGcUAGGC---CUG- -5'
15866 5' -62.1 NC_004065.1 + 110644 0.71 0.446083
Target:  5'- gGUG-CgCUGGGCCaaCGAUCCGGACu -3'
miRNA:   3'- aCGUaGgGACCCGGcgGCUAGGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 205896 0.7 0.498881
Target:  5'- cGUcgCCCuugacggaUGGGCCGCCGAggCC-GACg -3'
miRNA:   3'- aCGuaGGG--------ACCCGGCGGCUa-GGcCUG- -5'
15866 5' -62.1 NC_004065.1 + 131768 0.7 0.526308
Target:  5'- cGCG-CCCaGGGCCGCCG-UCCcGAg -3'
miRNA:   3'- aCGUaGGGaCCCGGCGGCuAGGcCUg -5'
15866 5' -62.1 NC_004065.1 + 32868 0.7 0.507956
Target:  5'- gGCGUCCCUGGucgagaggcgcGCCGgCGAgcgucugccgCUGGGCa -3'
miRNA:   3'- aCGUAGGGACC-----------CGGCgGCUa---------GGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 139910 0.69 0.544905
Target:  5'- cGCAUCCCccgagGGGUCgGUCGAcgaaCGGACg -3'
miRNA:   3'- aCGUAGGGa----CCCGG-CGGCUag--GCCUG- -5'
15866 5' -62.1 NC_004065.1 + 78487 0.69 0.563708
Target:  5'- gGUGUCCUUGcGGCCcuuGCCGccGUCCaGGGCg -3'
miRNA:   3'- aCGUAGGGAC-CCGG---CGGC--UAGG-CCUG- -5'
15866 5' -62.1 NC_004065.1 + 88568 0.69 0.58268
Target:  5'- cGUGUCCCaGGG-CGCagaGGUCCGaGACg -3'
miRNA:   3'- aCGUAGGGaCCCgGCGg--CUAGGC-CUG- -5'
15866 5' -62.1 NC_004065.1 + 151513 0.69 0.535578
Target:  5'- aGCGgugUUCUGaGGCCGCUGccggCCGGGCg -3'
miRNA:   3'- aCGUa--GGGAC-CCGGCGGCua--GGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 48498 0.68 0.640158
Target:  5'- aGCAUCaUCUGGG-CGUCGAUgCCGG-Cg -3'
miRNA:   3'- aCGUAG-GGACCCgGCGGCUA-GGCCuG- -5'
15866 5' -62.1 NC_004065.1 + 161761 0.68 0.592216
Target:  5'- gGguUCCUUcGGCCGacCCGGUCaCGGACu -3'
miRNA:   3'- aCguAGGGAcCCGGC--GGCUAG-GCCUG- -5'
15866 5' -62.1 NC_004065.1 + 201710 0.68 0.601777
Target:  5'- cGUAUCggaUGaGGCCGUCGAUCCGaGAUu -3'
miRNA:   3'- aCGUAGgg-AC-CCGGCGGCUAGGC-CUG- -5'
15866 5' -62.1 NC_004065.1 + 195587 0.68 0.611358
Target:  5'- cGCGUCCCccGGCCGUgCGAUCgUGGAg -3'
miRNA:   3'- aCGUAGGGacCCGGCG-GCUAG-GCCUg -5'
15866 5' -62.1 NC_004065.1 + 145464 0.68 0.620953
Target:  5'- gGCGUCgg-GGGCUGCCGGUCCa--- -3'
miRNA:   3'- aCGUAGggaCCCGGCGGCUAGGccug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.