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miRNA: 3'- acgUAGGG------------ACCCGG------CGGCUAGG--CCUG- -5'
miRNA: 3'- aCGUAGGGACC--CGGCG--------GCUAGGc----CUG- -5'
miRNA: 3'- aCGU--------------AGGGac-CCGGCGGCUaGGCCuG- -5'
miRNA: 3'- aCGUAGGGAccCGGCGGCUAGGcCUG- -5'
Results 41 - 44 of 44 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio#
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P value |
| Predicted miRNA align pattern | |||||||
| 15866 | 5' | -62.1 | NC_004065.1 | + | 46359 | 0.66 | 0.734725 |
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Target: 5'- --aGUCCCugggacacgaugUGGGCCaccucaGCCGGUCCcuGGACu -3' miRNA: 3'- acgUAGGG------------ACCCGG------CGGCUAGG--CCUG- -5' |
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| 15866 | 5' | -62.1 | NC_004065.1 | + | 61382 | 0.66 | 0.734725 |
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Target: 5'- cGCGUCCCUGGaaGCUGUuuccgcagCGAUCCaucauGACg -3' miRNA: 3'- aCGUAGGGACC--CGGCG--------GCUAGGc----CUG- -5' |
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| 15866 | 5' | -62.1 | NC_004065.1 | + | 64130 | 0.66 | 0.731965 |
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Target: 5'- cGCAgaaagggcuucuccUCCCgcuGGCCGCCGAcCUGGuCu -3' miRNA: 3'- aCGU--------------AGGGac-CCGGCGGCUaGGCCuG- -5' |
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| 15866 | 5' | -62.1 | NC_004065.1 | + | 77710 | 0.66 | 0.716199 |
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Target: 5'- cGUGUUCCU--GUCGCCGAUCCcGACg -3' miRNA: 3'- aCGUAGGGAccCGGCGGCUAGGcCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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