miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15866 5' -62.1 NC_004065.1 + 110644 0.71 0.446083
Target:  5'- gGUG-CgCUGGGCCaaCGAUCCGGACu -3'
miRNA:   3'- aCGUaGgGACCCGGcgGCUAGGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 115450 0.67 0.697419
Target:  5'- gGCAcUCCgccgcgcGGGUCG-CGAUCCGGAUg -3'
miRNA:   3'- aCGUaGGGa------CCCGGCgGCUAGGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 117116 0.78 0.18336
Target:  5'- cGCG-CCCUGGuGUCGCaccuGAUCCGGACg -3'
miRNA:   3'- aCGUaGGGACC-CGGCGg---CUAGGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 126064 0.67 0.687954
Target:  5'- cUGCGUCUCggugaaGGucaGCCGCUGGUCCaGGAa -3'
miRNA:   3'- -ACGUAGGGa-----CC---CGGCGGCUAGG-CCUg -5'
15866 5' -62.1 NC_004065.1 + 131333 0.74 0.302136
Target:  5'- gGCGUCCCcaugacGGGucCCGUCGAUCgGGACg -3'
miRNA:   3'- aCGUAGGGa-----CCC--GGCGGCUAGgCCUG- -5'
15866 5' -62.1 NC_004065.1 + 131768 0.7 0.526308
Target:  5'- cGCG-CCCaGGGCCGCCG-UCCcGAg -3'
miRNA:   3'- aCGUaGGGaCCCGGCGGCuAGGcCUg -5'
15866 5' -62.1 NC_004065.1 + 139910 0.69 0.544905
Target:  5'- cGCAUCCCccgagGGGUCgGUCGAcgaaCGGACg -3'
miRNA:   3'- aCGUAGGGa----CCCGG-CGGCUag--GCCUG- -5'
15866 5' -62.1 NC_004065.1 + 141466 0.66 0.741139
Target:  5'- cUGCG-CCCUGggacacguGGCCGCUuucugccuggucagGGUCCuGGACg -3'
miRNA:   3'- -ACGUaGGGAC--------CCGGCGG--------------CUAGG-CCUG- -5'
15866 5' -62.1 NC_004065.1 + 143616 0.66 0.738395
Target:  5'- cUGCAUCCCUacGCCGCgGAcUCCcugaaggauuccucgGGGCg -3'
miRNA:   3'- -ACGUAGGGAccCGGCGgCU-AGG---------------CCUG- -5'
15866 5' -62.1 NC_004065.1 + 145464 0.68 0.620953
Target:  5'- gGCGUCgg-GGGCUGCCGGUCCa--- -3'
miRNA:   3'- aCGUAGggaCCCGGCGGCUAGGccug -5'
15866 5' -62.1 NC_004065.1 + 147893 0.66 0.752938
Target:  5'- aGCGUCCgc--GCCGCCGGauacgucagCCGGGCg -3'
miRNA:   3'- aCGUAGGgaccCGGCGGCUa--------GGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 151513 0.69 0.535578
Target:  5'- aGCGgugUUCUGaGGCCGCUGccggCCGGGCg -3'
miRNA:   3'- aCGUa--GGGAC-CCGGCGGCua--GGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 161761 0.68 0.592216
Target:  5'- gGguUCCUUcGGCCGacCCGGUCaCGGACu -3'
miRNA:   3'- aCguAGGGAcCCGGC--GGCUAG-GCCUG- -5'
15866 5' -62.1 NC_004065.1 + 184187 0.68 0.592216
Target:  5'- cGCGUCCCgu-GCgGCCGGUCCGa-- -3'
miRNA:   3'- aCGUAGGGaccCGgCGGCUAGGCcug -5'
15866 5' -62.1 NC_004065.1 + 188825 0.72 0.396549
Target:  5'- aUGUAUUCCUGGuGCCGCUuGUCCGucaGGCa -3'
miRNA:   3'- -ACGUAGGGACC-CGGCGGcUAGGC---CUG- -5'
15866 5' -62.1 NC_004065.1 + 195587 0.68 0.611358
Target:  5'- cGCGUCCCccGGCCGUgCGAUCgUGGAg -3'
miRNA:   3'- aCGUAGGGacCCGGCG-GCUAG-GCCUg -5'
15866 5' -62.1 NC_004065.1 + 195790 0.67 0.668908
Target:  5'- cGCGUCUCUGGG-CGCCG---CGGAg -3'
miRNA:   3'- aCGUAGGGACCCgGCGGCuagGCCUg -5'
15866 5' -62.1 NC_004065.1 + 196885 0.67 0.653592
Target:  5'- gGCAUCCCccUGcccuucacGGCCGUCGAcugcauggacaucgaUCUGGGCu -3'
miRNA:   3'- aCGUAGGG--AC--------CCGGCGGCU---------------AGGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 200320 0.66 0.729197
Target:  5'- gGCAgagguaccagCCCgucGGGgCGCCGAggcucagcaaccugCCGGACu -3'
miRNA:   3'- aCGUa---------GGGa--CCCgGCGGCUa-------------GGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 201710 0.68 0.601777
Target:  5'- cGUAUCggaUGaGGCCGUCGAUCCGaGAUu -3'
miRNA:   3'- aCGUAGgg-AC-CCGGCGGCUAGGC-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.