Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15866 | 5' | -62.1 | NC_004065.1 | + | 126064 | 0.67 | 0.687954 |
Target: 5'- cUGCGUCUCggugaaGGucaGCCGCUGGUCCaGGAa -3' miRNA: 3'- -ACGUAGGGa-----CC---CGGCGGCUAGG-CCUg -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 117116 | 0.78 | 0.18336 |
Target: 5'- cGCG-CCCUGGuGUCGCaccuGAUCCGGACg -3' miRNA: 3'- aCGUaGGGACC-CGGCGg---CUAGGCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 115450 | 0.67 | 0.697419 |
Target: 5'- gGCAcUCCgccgcgcGGGUCG-CGAUCCGGAUg -3' miRNA: 3'- aCGUaGGGa------CCCGGCgGCUAGGCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 110644 | 0.71 | 0.446083 |
Target: 5'- gGUG-CgCUGGGCCaaCGAUCCGGACu -3' miRNA: 3'- aCGUaGgGACCCGGcgGCUAGGCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 109936 | 0.66 | 0.761907 |
Target: 5'- cGCGUCCCgGGaggucaugaGUCGCCucUCCGGcGCg -3' miRNA: 3'- aCGUAGGGaCC---------CGGCGGcuAGGCC-UG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 106999 | 0.78 | 0.170804 |
Target: 5'- gUGCAUCCCUGacgaguacguGGCCGCCaAUacCCGGACg -3' miRNA: 3'- -ACGUAGGGAC----------CCGGCGGcUA--GGCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 98266 | 0.77 | 0.201366 |
Target: 5'- gGCggCCCUGGGCgcgcgccuCGCgGAUCCGGAUc -3' miRNA: 3'- aCGuaGGGACCCG--------GCGgCUAGGCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 90116 | 0.67 | 0.668908 |
Target: 5'- ----cCCgCUGGcGCCGCCGG-CCGGAg -3' miRNA: 3'- acguaGG-GACC-CGGCGGCUaGGCCUg -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 88568 | 0.69 | 0.58268 |
Target: 5'- cGUGUCCCaGGG-CGCagaGGUCCGaGACg -3' miRNA: 3'- aCGUAGGGaCCCgGCGg--CUAGGC-CUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 82783 | 0.66 | 0.725498 |
Target: 5'- gGCGUCCggUGGcGCCGaCCcAUCCGGGg -3' miRNA: 3'- aCGUAGGg-ACC-CGGC-GGcUAGGCCUg -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 81654 | 0.66 | 0.734725 |
Target: 5'- aGCAugUCUCUGGuGUCGCUGAcgcugaCGGACc -3' miRNA: 3'- aCGU--AGGGACC-CGGCGGCUag----GCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 78487 | 0.69 | 0.563708 |
Target: 5'- gGUGUCCUUGcGGCCcuuGCCGccGUCCaGGGCg -3' miRNA: 3'- aCGUAGGGAC-CCGG---CGGC--UAGG-CCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 77710 | 0.66 | 0.716199 |
Target: 5'- cGUGUUCCU--GUCGCCGAUCCcGACg -3' miRNA: 3'- aCGUAGGGAccCGGCGGCUAGGcCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 72679 | 0.66 | 0.752938 |
Target: 5'- gUGCGgcaCCUGGagaacCUGCCGAgcgacCCGGACu -3' miRNA: 3'- -ACGUag-GGACCc----GGCGGCUa----GGCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 68732 | 0.75 | 0.253178 |
Target: 5'- cGCAUCCUgacgGGGUCGCUG--CCGGACu -3' miRNA: 3'- aCGUAGGGa---CCCGGCGGCuaGGCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 66857 | 0.98 | 0.007522 |
Target: 5'- aUGCAUCCCU-GGCCGCCGAUCCGGACg -3' miRNA: 3'- -ACGUAGGGAcCCGGCGGCUAGGCCUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 66136 | 0.68 | 0.601777 |
Target: 5'- gGCG-CgCUGGGCCGCgGA-CCGG-Cg -3' miRNA: 3'- aCGUaGgGACCCGGCGgCUaGGCCuG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 64130 | 0.66 | 0.731965 |
Target: 5'- cGCAgaaagggcuucuccUCCCgcuGGCCGCCGAcCUGGuCu -3' miRNA: 3'- aCGU--------------AGGGac-CCGGCGGCUaGGCCuG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 61382 | 0.66 | 0.734725 |
Target: 5'- cGCGUCCCUGGaaGCUGUuuccgcagCGAUCCaucauGACg -3' miRNA: 3'- aCGUAGGGACC--CGGCG--------GCUAGGc----CUG- -5' |
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15866 | 5' | -62.1 | NC_004065.1 | + | 48498 | 0.68 | 0.640158 |
Target: 5'- aGCAUCaUCUGGG-CGUCGAUgCCGG-Cg -3' miRNA: 3'- aCGUAG-GGACCCgGCGGCUA-GGCCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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