miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15866 5' -62.1 NC_004065.1 + 46359 0.66 0.734725
Target:  5'- --aGUCCCugggacacgaugUGGGCCaccucaGCCGGUCCcuGGACu -3'
miRNA:   3'- acgUAGGG------------ACCCGG------CGGCUAGG--CCUG- -5'
15866 5' -62.1 NC_004065.1 + 195790 0.67 0.668908
Target:  5'- cGCGUCUCUGGG-CGCCG---CGGAg -3'
miRNA:   3'- aCGUAGGGACCCgGCGGCuagGCCUg -5'
15866 5' -62.1 NC_004065.1 + 90116 0.67 0.668908
Target:  5'- ----cCCgCUGGcGCCGCCGG-CCGGAg -3'
miRNA:   3'- acguaGG-GACC-CGGCGGCUaGGCCUg -5'
15866 5' -62.1 NC_004065.1 + 48223 0.67 0.678447
Target:  5'- gGC-UCUUUcGGCUGCCGAUgCGGAUg -3'
miRNA:   3'- aCGuAGGGAcCCGGCGGCUAgGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 126064 0.67 0.687954
Target:  5'- cUGCGUCUCggugaaGGucaGCCGCUGGUCCaGGAa -3'
miRNA:   3'- -ACGUAGGGa-----CC---CGGCGGCUAGG-CCUg -5'
15866 5' -62.1 NC_004065.1 + 77710 0.66 0.716199
Target:  5'- cGUGUUCCU--GUCGCCGAUCCcGACg -3'
miRNA:   3'- aCGUAGGGAccCGGCGGCUAGGcCUG- -5'
15866 5' -62.1 NC_004065.1 + 200320 0.66 0.729197
Target:  5'- gGCAgagguaccagCCCgucGGGgCGCCGAggcucagcaaccugCCGGACu -3'
miRNA:   3'- aCGUa---------GGGa--CCCgGCGGCUa-------------GGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 64130 0.66 0.731965
Target:  5'- cGCAgaaagggcuucuccUCCCgcuGGCCGCCGAcCUGGuCu -3'
miRNA:   3'- aCGU--------------AGGGac-CCGGCGGCUaGGCCuG- -5'
15866 5' -62.1 NC_004065.1 + 61382 0.66 0.734725
Target:  5'- cGCGUCCCUGGaaGCUGUuuccgcagCGAUCCaucauGACg -3'
miRNA:   3'- aCGUAGGGACC--CGGCG--------GCUAGGc----CUG- -5'
15866 5' -62.1 NC_004065.1 + 48498 0.68 0.640158
Target:  5'- aGCAUCaUCUGGG-CGUCGAUgCCGG-Cg -3'
miRNA:   3'- aCGUAG-GGACCCgGCGGCUA-GGCCuG- -5'
15866 5' -62.1 NC_004065.1 + 145464 0.68 0.620953
Target:  5'- gGCGUCgg-GGGCUGCCGGUCCa--- -3'
miRNA:   3'- aCGUAGggaCCCGGCGGCUAGGccug -5'
15866 5' -62.1 NC_004065.1 + 195587 0.68 0.611358
Target:  5'- cGCGUCCCccGGCCGUgCGAUCgUGGAg -3'
miRNA:   3'- aCGUAGGGacCCGGCG-GCUAG-GCCUg -5'
15866 5' -62.1 NC_004065.1 + 98266 0.77 0.201366
Target:  5'- gGCggCCCUGGGCgcgcgccuCGCgGAUCCGGAUc -3'
miRNA:   3'- aCGuaGGGACCCG--------GCGgCUAGGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 68732 0.75 0.253178
Target:  5'- cGCAUCCUgacgGGGUCGCUG--CCGGACu -3'
miRNA:   3'- aCGUAGGGa---CCCGGCGGCuaGGCCUG- -5'
15866 5' -62.1 NC_004065.1 + 131333 0.74 0.302136
Target:  5'- gGCGUCCCcaugacGGGucCCGUCGAUCgGGACg -3'
miRNA:   3'- aCGUAGGGa-----CCC--GGCGGCUAGgCCUG- -5'
15866 5' -62.1 NC_004065.1 + 188825 0.72 0.396549
Target:  5'- aUGUAUUCCUGGuGCCGCUuGUCCGucaGGCa -3'
miRNA:   3'- -ACGUAGGGACC-CGGCGGcUAGGC---CUG- -5'
15866 5' -62.1 NC_004065.1 + 139910 0.69 0.544905
Target:  5'- cGCAUCCCccgagGGGUCgGUCGAcgaaCGGACg -3'
miRNA:   3'- aCGUAGGGa----CCCGG-CGGCUag--GCCUG- -5'
15866 5' -62.1 NC_004065.1 + 161761 0.68 0.592216
Target:  5'- gGguUCCUUcGGCCGacCCGGUCaCGGACu -3'
miRNA:   3'- aCguAGGGAcCCGGC--GGCUAG-GCCUG- -5'
15866 5' -62.1 NC_004065.1 + 66136 0.68 0.601777
Target:  5'- gGCG-CgCUGGGCCGCgGA-CCGG-Cg -3'
miRNA:   3'- aCGUaGgGACCCGGCGgCUaGGCCuG- -5'
15866 5' -62.1 NC_004065.1 + 201710 0.68 0.601777
Target:  5'- cGUAUCggaUGaGGCCGUCGAUCCGaGAUu -3'
miRNA:   3'- aCGUAGgg-AC-CCGGCGGCUAGGC-CUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.