Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 224995 | 0.66 | 0.963343 |
Target: 5'- -gUCGAGCUgACCCAaguacaccgucuggUCGucGUGGuuGc -3' miRNA: 3'- cgAGCUCGA-UGGGU--------------AGCuuCACCggC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 110698 | 0.66 | 0.964319 |
Target: 5'- uCUgGAGCUGCCCAgggCGAGa--GCCGc -3' miRNA: 3'- cGAgCUCGAUGGGUa--GCUUcacCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 189450 | 0.66 | 0.973097 |
Target: 5'- cGCUCGAGagACCCGUCGAcGGUacGaCCGc -3' miRNA: 3'- -CGAGCUCgaUGGGUAGCU-UCA--CcGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 127464 | 0.66 | 0.975641 |
Target: 5'- -gUCGAuCUcCCCGggGAGGUGGUCGg -3' miRNA: 3'- cgAGCUcGAuGGGUagCUUCACCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 67488 | 0.66 | 0.970366 |
Target: 5'- uCUCGAGa-GCCCGUCcGAGaccUGGCCc -3' miRNA: 3'- cGAGCUCgaUGGGUAGcUUC---ACCGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 48104 | 0.66 | 0.967442 |
Target: 5'- aCUCaGAgGCUGCagCCAUCuuGGUGGCCu -3' miRNA: 3'- cGAG-CU-CGAUG--GGUAGcuUCACCGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 8128 | 0.66 | 0.973097 |
Target: 5'- aGC-CGGGCg--CCGUCGAGGUcgacgcagaaGGCCa -3' miRNA: 3'- -CGaGCUCGaugGGUAGCUUCA----------CCGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 114103 | 0.66 | 0.973097 |
Target: 5'- aGCcagCGAGCUGCCgGcCGA---GGCCGa -3' miRNA: 3'- -CGa--GCUCGAUGGgUaGCUucaCCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 28459 | 0.66 | 0.975641 |
Target: 5'- gGCuUCGAagGCUACUCGcUCGA-GUcGGCCGc -3' miRNA: 3'- -CG-AGCU--CGAUGGGU-AGCUuCA-CCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 93972 | 0.66 | 0.970366 |
Target: 5'- gGCUCGAuGCU-CCguUCGGcacccUGGCCGg -3' miRNA: 3'- -CGAGCU-CGAuGGguAGCUuc---ACCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 32827 | 0.67 | 0.957457 |
Target: 5'- -gUCGGGCcGCUCGUcCGAgaaGGUGaGCCGg -3' miRNA: 3'- cgAGCUCGaUGGGUA-GCU---UCAC-CGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 109557 | 0.67 | 0.953709 |
Target: 5'- -gUCGucAGCga-CC-UCGAGGUGGCCGc -3' miRNA: 3'- cgAGC--UCGaugGGuAGCUUCACCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 151927 | 0.67 | 0.944697 |
Target: 5'- aGUUCGGGCUGCCCcucaaguccgagcacGUCGAGuaccucgacagguucGUGcGCCc -3' miRNA: 3'- -CGAGCUCGAUGGG---------------UAGCUU---------------CAC-CGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 210255 | 0.67 | 0.957457 |
Target: 5'- aCUCGAaCUGCCCAUCGAucgacgacaacAGcauGCCGg -3' miRNA: 3'- cGAGCUcGAUGGGUAGCU-----------UCac-CGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 166436 | 0.67 | 0.960992 |
Target: 5'- uGCUCGucAGCcucuucuuCCUcUCGAuGGUGGCCGa -3' miRNA: 3'- -CGAGC--UCGau------GGGuAGCU-UCACCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 140529 | 0.67 | 0.960992 |
Target: 5'- cGCUCaaGAGCUGCCgCAUC-AAGaaucGGCCc -3' miRNA: 3'- -CGAG--CUCGAUGG-GUAGcUUCa---CCGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 208023 | 0.67 | 0.960992 |
Target: 5'- uGC-CGgcGGCgaugaCCGUCGgcGUGGCCGu -3' miRNA: 3'- -CGaGC--UCGaug--GGUAGCuuCACCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 30156 | 0.67 | 0.948512 |
Target: 5'- cGCUCGuGCUgugcgGCaCCGaCGAgugccugcggcgguGGUGGCCGu -3' miRNA: 3'- -CGAGCuCGA-----UG-GGUaGCU--------------UCACCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 146594 | 0.67 | 0.957457 |
Target: 5'- -aUCGGGgUGgCCAUCGggGccgucggcggGGCCGu -3' miRNA: 3'- cgAGCUCgAUgGGUAGCuuCa---------CCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 79563 | 0.67 | 0.941153 |
Target: 5'- gGCgcagCGGcGCUuCCUGgcCGAGGUGGCCGa -3' miRNA: 3'- -CGa---GCU-CGAuGGGUa-GCUUCACCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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