miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 3' -55.2 NC_004065.1 + 202199 0.68 0.931665
Target:  5'- gGC-CGAGC-ACCCGcaggcacaUCGGAG-GGCUGg -3'
miRNA:   3'- -CGaGCUCGaUGGGU--------AGCUUCaCCGGC- -5'
15867 3' -55.2 NC_004065.1 + 195336 0.68 0.931665
Target:  5'- uGCUCcuGGGCggcGCCCGcgucUUGAAgGUGGCCa -3'
miRNA:   3'- -CGAG--CUCGa--UGGGU----AGCUU-CACCGGc -5'
15867 3' -55.2 NC_004065.1 + 223297 0.68 0.936522
Target:  5'- cGC-CGcGGCUACCCcgAUCGAAaUGGCUa -3'
miRNA:   3'- -CGaGC-UCGAUGGG--UAGCUUcACCGGc -5'
15867 3' -55.2 NC_004065.1 + 201567 0.68 0.936522
Target:  5'- aCUCGAGCgaguaGCCU-UCGAAGccugccuuuccaUGGCCGc -3'
miRNA:   3'- cGAGCUCGa----UGGGuAGCUUC------------ACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 79563 0.67 0.941153
Target:  5'- gGCgcagCGGcGCUuCCUGgcCGAGGUGGCCGa -3'
miRNA:   3'- -CGa---GCU-CGAuGGGUa-GCUUCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 151927 0.67 0.944697
Target:  5'- aGUUCGGGCUGCCCcucaaguccgagcacGUCGAGuaccucgacagguucGUGcGCCc -3'
miRNA:   3'- -CGAGCUCGAUGGG---------------UAGCUU---------------CAC-CGGc -5'
15867 3' -55.2 NC_004065.1 + 87069 0.67 0.94556
Target:  5'- -gUUGAGCUGCCuCAUCGuaauccccacGUGGCgGa -3'
miRNA:   3'- cgAGCUCGAUGG-GUAGCuu--------CACCGgC- -5'
15867 3' -55.2 NC_004065.1 + 30156 0.67 0.948512
Target:  5'- cGCUCGuGCUgugcgGCaCCGaCGAgugccugcggcgguGGUGGCCGu -3'
miRNA:   3'- -CGAGCuCGA-----UG-GGUaGCU--------------UCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 129469 0.67 0.949744
Target:  5'- cGCUCGAgaacguGCUGCUCAaaGAGcUGGCCu -3'
miRNA:   3'- -CGAGCU------CGAUGGGUagCUUcACCGGc -5'
15867 3' -55.2 NC_004065.1 + 109557 0.67 0.953709
Target:  5'- -gUCGucAGCga-CC-UCGAGGUGGCCGc -3'
miRNA:   3'- cgAGC--UCGaugGGuAGCUUCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 146594 0.67 0.957457
Target:  5'- -aUCGGGgUGgCCAUCGggGccgucggcggGGCCGu -3'
miRNA:   3'- cgAGCUCgAUgGGUAGCuuCa---------CCGGC- -5'
15867 3' -55.2 NC_004065.1 + 210255 0.67 0.957457
Target:  5'- aCUCGAaCUGCCCAUCGAucgacgacaacAGcauGCCGg -3'
miRNA:   3'- cGAGCUcGAUGGGUAGCU-----------UCac-CGGC- -5'
15867 3' -55.2 NC_004065.1 + 34377 0.67 0.957457
Target:  5'- cGCUCG-GCUGCCgGgaggCGAGGcgaaacUGGCgGg -3'
miRNA:   3'- -CGAGCuCGAUGGgUa---GCUUC------ACCGgC- -5'
15867 3' -55.2 NC_004065.1 + 32827 0.67 0.957457
Target:  5'- -gUCGGGCcGCUCGUcCGAgaaGGUGaGCCGg -3'
miRNA:   3'- cgAGCUCGaUGGGUA-GCU---UCAC-CGGC- -5'
15867 3' -55.2 NC_004065.1 + 208023 0.67 0.960992
Target:  5'- uGC-CGgcGGCgaugaCCGUCGgcGUGGCCGu -3'
miRNA:   3'- -CGaGC--UCGaug--GGUAGCuuCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 140529 0.67 0.960992
Target:  5'- cGCUCaaGAGCUGCCgCAUC-AAGaaucGGCCc -3'
miRNA:   3'- -CGAG--CUCGAUGG-GUAGcUUCa---CCGGc -5'
15867 3' -55.2 NC_004065.1 + 166436 0.67 0.960992
Target:  5'- uGCUCGucAGCcucuucuuCCUcUCGAuGGUGGCCGa -3'
miRNA:   3'- -CGAGC--UCGau------GGGuAGCU-UCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 224995 0.66 0.963343
Target:  5'- -gUCGAGCUgACCCAaguacaccgucuggUCGucGUGGuuGc -3'
miRNA:   3'- cgAGCUCGA-UGGGU--------------AGCuuCACCggC- -5'
15867 3' -55.2 NC_004065.1 + 110698 0.66 0.964319
Target:  5'- uCUgGAGCUGCCCAgggCGAGa--GCCGc -3'
miRNA:   3'- cGAgCUCGAUGGGUa--GCUUcacCGGC- -5'
15867 3' -55.2 NC_004065.1 + 48104 0.66 0.967442
Target:  5'- aCUCaGAgGCUGCagCCAUCuuGGUGGCCu -3'
miRNA:   3'- cGAG-CU-CGAUG--GGUAGcuUCACCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.