Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 87069 | 0.67 | 0.94556 |
Target: 5'- -gUUGAGCUGCCuCAUCGuaauccccacGUGGCgGa -3' miRNA: 3'- cgAGCUCGAUGG-GUAGCuu--------CACCGgC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 151927 | 0.67 | 0.944697 |
Target: 5'- aGUUCGGGCUGCCCcucaaguccgagcacGUCGAGuaccucgacagguucGUGcGCCc -3' miRNA: 3'- -CGAGCUCGAUGGG---------------UAGCUU---------------CAC-CGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 79563 | 0.67 | 0.941153 |
Target: 5'- gGCgcagCGGcGCUuCCUGgcCGAGGUGGCCGa -3' miRNA: 3'- -CGa---GCU-CGAuGGGUa-GCUUCACCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 223297 | 0.68 | 0.936522 |
Target: 5'- cGC-CGcGGCUACCCcgAUCGAAaUGGCUa -3' miRNA: 3'- -CGaGC-UCGAUGGG--UAGCUUcACCGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 201567 | 0.68 | 0.936522 |
Target: 5'- aCUCGAGCgaguaGCCU-UCGAAGccugccuuuccaUGGCCGc -3' miRNA: 3'- cGAGCUCGa----UGGGuAGCUUC------------ACCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 202199 | 0.68 | 0.931665 |
Target: 5'- gGC-CGAGC-ACCCGcaggcacaUCGGAG-GGCUGg -3' miRNA: 3'- -CGaGCUCGaUGGGU--------AGCUUCaCCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 195336 | 0.68 | 0.931665 |
Target: 5'- uGCUCcuGGGCggcGCCCGcgucUUGAAgGUGGCCa -3' miRNA: 3'- -CGAG--CUCGa--UGGGU----AGCUU-CACCGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 47723 | 0.68 | 0.926581 |
Target: 5'- cCUCGAGCgugGCCUugaucacgggGUCaGAGGccaUGGCCGg -3' miRNA: 3'- cGAGCUCGa--UGGG----------UAG-CUUC---ACCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 139575 | 0.68 | 0.926581 |
Target: 5'- cGCgcaGAGC-ACUCGg-GAGGUGGCCGc -3' miRNA: 3'- -CGag-CUCGaUGGGUagCUUCACCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 62343 | 0.68 | 0.926581 |
Target: 5'- gGCUCGGGCUgGgUCGUCGGuuuucgacggcGGUGGCgGc -3' miRNA: 3'- -CGAGCUCGA-UgGGUAGCU-----------UCACCGgC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 31016 | 0.68 | 0.926581 |
Target: 5'- uGUUCGAGCUugCCcUCGGccgcGGCCc -3' miRNA: 3'- -CGAGCUCGAugGGuAGCUuca-CCGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 143649 | 0.68 | 0.92127 |
Target: 5'- gGC-CGAGacCUACCC--CGAcGUGGCCGa -3' miRNA: 3'- -CGaGCUC--GAUGGGuaGCUuCACCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 134482 | 0.68 | 0.92127 |
Target: 5'- uGUUCGugcAGCUGgUCAUCGGAGUGcauGCCa -3' miRNA: 3'- -CGAGC---UCGAUgGGUAGCUUCAC---CGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 173942 | 0.68 | 0.915732 |
Target: 5'- uGCUgCGAGCagaaccucauCgCCAUCGggGUGGUCc -3' miRNA: 3'- -CGA-GCUCGau--------G-GGUAGCuuCACCGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 116096 | 0.69 | 0.903982 |
Target: 5'- gGC-CGAGCUcAUCCGgcgaGggGUGGUCGc -3' miRNA: 3'- -CGaGCUCGA-UGGGUag--CuuCACCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 93342 | 0.69 | 0.903982 |
Target: 5'- aGCUCGAGCcgGCCCGcCGcc--GGCCa -3' miRNA: 3'- -CGAGCUCGa-UGGGUaGCuucaCCGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 149141 | 0.69 | 0.897139 |
Target: 5'- -gUCGAGUcGCCUgaucuucGUCGggG-GGCCGg -3' miRNA: 3'- cgAGCUCGaUGGG-------UAGCuuCaCCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 125241 | 0.69 | 0.891344 |
Target: 5'- aGCUCGA--UGCCCGucUCGAAGgccGCCGg -3' miRNA: 3'- -CGAGCUcgAUGGGU--AGCUUCac-CGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 176137 | 0.71 | 0.832514 |
Target: 5'- aCUCGAaCUGuuuCCCGUCGAcgccaacggAGUGGCCa -3' miRNA: 3'- cGAGCUcGAU---GGGUAGCU---------UCACCGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 209973 | 0.72 | 0.770999 |
Target: 5'- gGCUCGAGCgagagcACCCGaCGAucugacauuguccAGUGuGCCGg -3' miRNA: 3'- -CGAGCUCGa-----UGGGUaGCU-------------UCAC-CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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