miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 3' -55.2 NC_004065.1 + 8128 0.66 0.973097
Target:  5'- aGC-CGGGCg--CCGUCGAGGUcgacgcagaaGGCCa -3'
miRNA:   3'- -CGaGCUCGaugGGUAGCUUCA----------CCGGc -5'
15867 3' -55.2 NC_004065.1 + 20067 0.76 0.518318
Target:  5'- cGCUCGAGCcGCCCGUCG----GGCCa -3'
miRNA:   3'- -CGAGCUCGaUGGGUAGCuucaCCGGc -5'
15867 3' -55.2 NC_004065.1 + 28459 0.66 0.975641
Target:  5'- gGCuUCGAagGCUACUCGcUCGA-GUcGGCCGc -3'
miRNA:   3'- -CG-AGCU--CGAUGGGU-AGCUuCA-CCGGC- -5'
15867 3' -55.2 NC_004065.1 + 30156 0.67 0.948512
Target:  5'- cGCUCGuGCUgugcgGCaCCGaCGAgugccugcggcgguGGUGGCCGu -3'
miRNA:   3'- -CGAGCuCGA-----UG-GGUaGCU--------------UCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 31016 0.68 0.926581
Target:  5'- uGUUCGAGCUugCCcUCGGccgcGGCCc -3'
miRNA:   3'- -CGAGCUCGAugGGuAGCUuca-CCGGc -5'
15867 3' -55.2 NC_004065.1 + 32827 0.67 0.957457
Target:  5'- -gUCGGGCcGCUCGUcCGAgaaGGUGaGCCGg -3'
miRNA:   3'- cgAGCUCGaUGGGUA-GCU---UCAC-CGGC- -5'
15867 3' -55.2 NC_004065.1 + 34377 0.67 0.957457
Target:  5'- cGCUCG-GCUGCCgGgaggCGAGGcgaaacUGGCgGg -3'
miRNA:   3'- -CGAGCuCGAUGGgUa---GCUUC------ACCGgC- -5'
15867 3' -55.2 NC_004065.1 + 47723 0.68 0.926581
Target:  5'- cCUCGAGCgugGCCUugaucacgggGUCaGAGGccaUGGCCGg -3'
miRNA:   3'- cGAGCUCGa--UGGG----------UAG-CUUC---ACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 48104 0.66 0.967442
Target:  5'- aCUCaGAgGCUGCagCCAUCuuGGUGGCCu -3'
miRNA:   3'- cGAG-CU-CGAUG--GGUAGcuUCACCGGc -5'
15867 3' -55.2 NC_004065.1 + 62343 0.68 0.926581
Target:  5'- gGCUCGGGCUgGgUCGUCGGuuuucgacggcGGUGGCgGc -3'
miRNA:   3'- -CGAGCUCGA-UgGGUAGCU-----------UCACCGgC- -5'
15867 3' -55.2 NC_004065.1 + 66567 1.11 0.003897
Target:  5'- aGCUCGAGCUACCCAUCGAAGUGGCCGa -3'
miRNA:   3'- -CGAGCUCGAUGGGUAGCUUCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 67488 0.66 0.970366
Target:  5'- uCUCGAGa-GCCCGUCcGAGaccUGGCCc -3'
miRNA:   3'- cGAGCUCgaUGGGUAGcUUC---ACCGGc -5'
15867 3' -55.2 NC_004065.1 + 79563 0.67 0.941153
Target:  5'- gGCgcagCGGcGCUuCCUGgcCGAGGUGGCCGa -3'
miRNA:   3'- -CGa---GCU-CGAuGGGUa-GCUUCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 87069 0.67 0.94556
Target:  5'- -gUUGAGCUGCCuCAUCGuaauccccacGUGGCgGa -3'
miRNA:   3'- cgAGCUCGAUGG-GUAGCuu--------CACCGgC- -5'
15867 3' -55.2 NC_004065.1 + 93342 0.69 0.903982
Target:  5'- aGCUCGAGCcgGCCCGcCGcc--GGCCa -3'
miRNA:   3'- -CGAGCUCGa-UGGGUaGCuucaCCGGc -5'
15867 3' -55.2 NC_004065.1 + 93972 0.66 0.970366
Target:  5'- gGCUCGAuGCU-CCguUCGGcacccUGGCCGg -3'
miRNA:   3'- -CGAGCU-CGAuGGguAGCUuc---ACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 109557 0.67 0.953709
Target:  5'- -gUCGucAGCga-CC-UCGAGGUGGCCGc -3'
miRNA:   3'- cgAGC--UCGaugGGuAGCUUCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 110698 0.66 0.964319
Target:  5'- uCUgGAGCUGCCCAgggCGAGa--GCCGc -3'
miRNA:   3'- cGAgCUCGAUGGGUa--GCUUcacCGGC- -5'
15867 3' -55.2 NC_004065.1 + 114103 0.66 0.973097
Target:  5'- aGCcagCGAGCUGCCgGcCGA---GGCCGa -3'
miRNA:   3'- -CGa--GCUCGAUGGgUaGCUucaCCGGC- -5'
15867 3' -55.2 NC_004065.1 + 116096 0.69 0.903982
Target:  5'- gGC-CGAGCUcAUCCGgcgaGggGUGGUCGc -3'
miRNA:   3'- -CGaGCUCGA-UGGGUag--CuuCACCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.