Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 202199 | 0.68 | 0.931665 |
Target: 5'- gGC-CGAGC-ACCCGcaggcacaUCGGAG-GGCUGg -3' miRNA: 3'- -CGaGCUCGaUGGGU--------AGCUUCaCCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 208023 | 0.67 | 0.960992 |
Target: 5'- uGC-CGgcGGCgaugaCCGUCGgcGUGGCCGu -3' miRNA: 3'- -CGaGC--UCGaug--GGUAGCuuCACCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 209973 | 0.72 | 0.770999 |
Target: 5'- gGCUCGAGCgagagcACCCGaCGAucugacauuguccAGUGuGCCGg -3' miRNA: 3'- -CGAGCUCGa-----UGGGUaGCU-------------UCAC-CGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 210255 | 0.67 | 0.957457 |
Target: 5'- aCUCGAaCUGCCCAUCGAucgacgacaacAGcauGCCGg -3' miRNA: 3'- cGAGCUcGAUGGGUAGCU-----------UCac-CGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 217163 | 0.72 | 0.753411 |
Target: 5'- cGCUCGuucucguguguGCU-CUCGUCGAGGUGGuuGg -3' miRNA: 3'- -CGAGCu----------CGAuGGGUAGCUUCACCggC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 223297 | 0.68 | 0.936522 |
Target: 5'- cGC-CGcGGCUACCCcgAUCGAAaUGGCUa -3' miRNA: 3'- -CGaGC-UCGAUGGG--UAGCUUcACCGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 224995 | 0.66 | 0.963343 |
Target: 5'- -gUCGAGCUgACCCAaguacaccgucuggUCGucGUGGuuGc -3' miRNA: 3'- cgAGCUCGA-UGGGU--------------AGCuuCACCggC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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