Results 21 - 40 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 139575 | 0.68 | 0.926581 |
Target: 5'- cGCgcaGAGC-ACUCGg-GAGGUGGCCGc -3' miRNA: 3'- -CGag-CUCGaUGGGUagCUUCACCGGC- -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 135322 | 0.73 | 0.724919 |
Target: 5'- cGCUCGAGCcGCCC-UCcAAGgucaggGGCCGc -3' miRNA: 3'- -CGAGCUCGaUGGGuAGcUUCa-----CCGGC- -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 134482 | 0.68 | 0.92127 |
Target: 5'- uGUUCGugcAGCUGgUCAUCGGAGUGcauGCCa -3' miRNA: 3'- -CGAGC---UCGAUgGGUAGCUUCAC---CGGc -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 129469 | 0.67 | 0.949744 |
Target: 5'- cGCUCGAgaacguGCUGCUCAaaGAGcUGGCCu -3' miRNA: 3'- -CGAGCU------CGAUGGGUagCUUcACCGGc -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 127464 | 0.66 | 0.975641 |
Target: 5'- -gUCGAuCUcCCCGggGAGGUGGUCGg -3' miRNA: 3'- cgAGCUcGAuGGGUagCUUCACCGGC- -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 125241 | 0.69 | 0.891344 |
Target: 5'- aGCUCGA--UGCCCGucUCGAAGgccGCCGg -3' miRNA: 3'- -CGAGCUcgAUGGGU--AGCUUCac-CGGC- -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 122875 | 0.72 | 0.762717 |
Target: 5'- cCUgCGAGCUGCCCAgcaGAuGGUGGCgGu -3' miRNA: 3'- cGA-GCUCGAUGGGUag-CU-UCACCGgC- -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 116096 | 0.69 | 0.903982 |
Target: 5'- gGC-CGAGCUcAUCCGgcgaGggGUGGUCGc -3' miRNA: 3'- -CGaGCUCGA-UGGGUag--CuuCACCGGC- -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 114103 | 0.66 | 0.973097 |
Target: 5'- aGCcagCGAGCUGCCgGcCGA---GGCCGa -3' miRNA: 3'- -CGa--GCUCGAUGGgUaGCUucaCCGGC- -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 110698 | 0.66 | 0.964319 |
Target: 5'- uCUgGAGCUGCCCAgggCGAGa--GCCGc -3' miRNA: 3'- cGAgCUCGAUGGGUa--GCUUcacCGGC- -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 109557 | 0.67 | 0.953709 |
Target: 5'- -gUCGucAGCga-CC-UCGAGGUGGCCGc -3' miRNA: 3'- cgAGC--UCGaugGGuAGCUUCACCGGC- -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 93972 | 0.66 | 0.970366 |
Target: 5'- gGCUCGAuGCU-CCguUCGGcacccUGGCCGg -3' miRNA: 3'- -CGAGCU-CGAuGGguAGCUuc---ACCGGC- -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 93342 | 0.69 | 0.903982 |
Target: 5'- aGCUCGAGCcgGCCCGcCGcc--GGCCa -3' miRNA: 3'- -CGAGCUCGa-UGGGUaGCuucaCCGGc -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 87069 | 0.67 | 0.94556 |
Target: 5'- -gUUGAGCUGCCuCAUCGuaauccccacGUGGCgGa -3' miRNA: 3'- cgAGCUCGAUGG-GUAGCuu--------CACCGgC- -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 79563 | 0.67 | 0.941153 |
Target: 5'- gGCgcagCGGcGCUuCCUGgcCGAGGUGGCCGa -3' miRNA: 3'- -CGa---GCU-CGAuGGGUa-GCUUCACCGGC- -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 67488 | 0.66 | 0.970366 |
Target: 5'- uCUCGAGa-GCCCGUCcGAGaccUGGCCc -3' miRNA: 3'- cGAGCUCgaUGGGUAGcUUC---ACCGGc -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 66567 | 1.11 | 0.003897 |
Target: 5'- aGCUCGAGCUACCCAUCGAAGUGGCCGa -3' miRNA: 3'- -CGAGCUCGAUGGGUAGCUUCACCGGC- -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 62343 | 0.68 | 0.926581 |
Target: 5'- gGCUCGGGCUgGgUCGUCGGuuuucgacggcGGUGGCgGc -3' miRNA: 3'- -CGAGCUCGA-UgGGUAGCU-----------UCACCGgC- -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 48104 | 0.66 | 0.967442 |
Target: 5'- aCUCaGAgGCUGCagCCAUCuuGGUGGCCu -3' miRNA: 3'- cGAG-CU-CGAUG--GGUAGcuUCACCGGc -5' |
|||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 47723 | 0.68 | 0.926581 |
Target: 5'- cCUCGAGCgugGCCUugaucacgggGUCaGAGGccaUGGCCGg -3' miRNA: 3'- cGAGCUCGa--UGGG----------UAG-CUUC---ACCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home