Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15867 | 3' | -55.2 | NC_004065.1 | + | 34377 | 0.67 | 0.957457 |
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Target: 5'- cGCUCG-GCUGCCgGgaggCGAGGcgaaacUGGCgGg -3' miRNA: 3'- -CGAGCuCGAUGGgUa---GCUUC------ACCGgC- -5' |
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| 15867 | 3' | -55.2 | NC_004065.1 | + | 32827 | 0.67 | 0.957457 |
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Target: 5'- -gUCGGGCcGCUCGUcCGAgaaGGUGaGCCGg -3' miRNA: 3'- cgAGCUCGaUGGGUA-GCU---UCAC-CGGC- -5' |
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| 15867 | 3' | -55.2 | NC_004065.1 | + | 31016 | 0.68 | 0.926581 |
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Target: 5'- uGUUCGAGCUugCCcUCGGccgcGGCCc -3' miRNA: 3'- -CGAGCUCGAugGGuAGCUuca-CCGGc -5' |
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| 15867 | 3' | -55.2 | NC_004065.1 | + | 30156 | 0.67 | 0.948512 |
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Target: 5'- cGCUCGuGCUgugcgGCaCCGaCGAgugccugcggcgguGGUGGCCGu -3' miRNA: 3'- -CGAGCuCGA-----UG-GGUaGCU--------------UCACCGGC- -5' |
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| 15867 | 3' | -55.2 | NC_004065.1 | + | 28459 | 0.66 | 0.975641 |
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Target: 5'- gGCuUCGAagGCUACUCGcUCGA-GUcGGCCGc -3' miRNA: 3'- -CG-AGCU--CGAUGGGU-AGCUuCA-CCGGC- -5' |
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| 15867 | 3' | -55.2 | NC_004065.1 | + | 20067 | 0.76 | 0.518318 |
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Target: 5'- cGCUCGAGCcGCCCGUCG----GGCCa -3' miRNA: 3'- -CGAGCUCGaUGGGUAGCuucaCCGGc -5' |
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| 15867 | 3' | -55.2 | NC_004065.1 | + | 8128 | 0.66 | 0.973097 |
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Target: 5'- aGC-CGGGCg--CCGUCGAGGUcgacgcagaaGGCCa -3' miRNA: 3'- -CGaGCUCGaugGGUAGCUUCA----------CCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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