miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 3' -55.2 NC_004065.1 + 34377 0.67 0.957457
Target:  5'- cGCUCG-GCUGCCgGgaggCGAGGcgaaacUGGCgGg -3'
miRNA:   3'- -CGAGCuCGAUGGgUa---GCUUC------ACCGgC- -5'
15867 3' -55.2 NC_004065.1 + 47723 0.68 0.926581
Target:  5'- cCUCGAGCgugGCCUugaucacgggGUCaGAGGccaUGGCCGg -3'
miRNA:   3'- cGAGCUCGa--UGGG----------UAG-CUUC---ACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 223297 0.68 0.936522
Target:  5'- cGC-CGcGGCUACCCcgAUCGAAaUGGCUa -3'
miRNA:   3'- -CGaGC-UCGAUGGG--UAGCUUcACCGGc -5'
15867 3' -55.2 NC_004065.1 + 151927 0.67 0.944697
Target:  5'- aGUUCGGGCUGCCCcucaaguccgagcacGUCGAGuaccucgacagguucGUGcGCCc -3'
miRNA:   3'- -CGAGCUCGAUGGG---------------UAGCUU---------------CAC-CGGc -5'
15867 3' -55.2 NC_004065.1 + 87069 0.67 0.94556
Target:  5'- -gUUGAGCUGCCuCAUCGuaauccccacGUGGCgGa -3'
miRNA:   3'- cgAGCUCGAUGG-GUAGCuu--------CACCGgC- -5'
15867 3' -55.2 NC_004065.1 + 129469 0.67 0.949744
Target:  5'- cGCUCGAgaacguGCUGCUCAaaGAGcUGGCCu -3'
miRNA:   3'- -CGAGCU------CGAUGGGUagCUUcACCGGc -5'
15867 3' -55.2 NC_004065.1 + 109557 0.67 0.953709
Target:  5'- -gUCGucAGCga-CC-UCGAGGUGGCCGc -3'
miRNA:   3'- cgAGC--UCGaugGGuAGCUUCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 210255 0.67 0.957457
Target:  5'- aCUCGAaCUGCCCAUCGAucgacgacaacAGcauGCCGg -3'
miRNA:   3'- cGAGCUcGAUGGGUAGCU-----------UCac-CGGC- -5'
15867 3' -55.2 NC_004065.1 + 32827 0.67 0.957457
Target:  5'- -gUCGGGCcGCUCGUcCGAgaaGGUGaGCCGg -3'
miRNA:   3'- cgAGCUCGaUGGGUA-GCU---UCAC-CGGC- -5'
15867 3' -55.2 NC_004065.1 + 139575 0.68 0.926581
Target:  5'- cGCgcaGAGC-ACUCGg-GAGGUGGCCGc -3'
miRNA:   3'- -CGag-CUCGaUGGGUagCUUCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 62343 0.68 0.926581
Target:  5'- gGCUCGGGCUgGgUCGUCGGuuuucgacggcGGUGGCgGc -3'
miRNA:   3'- -CGAGCUCGA-UgGGUAGCU-----------UCACCGgC- -5'
15867 3' -55.2 NC_004065.1 + 31016 0.68 0.926581
Target:  5'- uGUUCGAGCUugCCcUCGGccgcGGCCc -3'
miRNA:   3'- -CGAGCUCGAugGGuAGCUuca-CCGGc -5'
15867 3' -55.2 NC_004065.1 + 135322 0.73 0.724919
Target:  5'- cGCUCGAGCcGCCC-UCcAAGgucaggGGCCGc -3'
miRNA:   3'- -CGAGCUCGaUGGGuAGcUUCa-----CCGGC- -5'
15867 3' -55.2 NC_004065.1 + 122875 0.72 0.762717
Target:  5'- cCUgCGAGCUGCCCAgcaGAuGGUGGCgGu -3'
miRNA:   3'- cGA-GCUCGAUGGGUag-CU-UCACCGgC- -5'
15867 3' -55.2 NC_004065.1 + 209973 0.72 0.770999
Target:  5'- gGCUCGAGCgagagcACCCGaCGAucugacauuguccAGUGuGCCGg -3'
miRNA:   3'- -CGAGCUCGa-----UGGGUaGCU-------------UCAC-CGGC- -5'
15867 3' -55.2 NC_004065.1 + 125241 0.69 0.891344
Target:  5'- aGCUCGA--UGCCCGucUCGAAGgccGCCGg -3'
miRNA:   3'- -CGAGCUcgAUGGGU--AGCUUCac-CGGC- -5'
15867 3' -55.2 NC_004065.1 + 149141 0.69 0.897139
Target:  5'- -gUCGAGUcGCCUgaucuucGUCGggG-GGCCGg -3'
miRNA:   3'- cgAGCUCGaUGGG-------UAGCuuCaCCGGC- -5'
15867 3' -55.2 NC_004065.1 + 93342 0.69 0.903982
Target:  5'- aGCUCGAGCcgGCCCGcCGcc--GGCCa -3'
miRNA:   3'- -CGAGCUCGa-UGGGUaGCuucaCCGGc -5'
15867 3' -55.2 NC_004065.1 + 116096 0.69 0.903982
Target:  5'- gGC-CGAGCUcAUCCGgcgaGggGUGGUCGc -3'
miRNA:   3'- -CGaGCUCGA-UGGGUag--CuuCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 134482 0.68 0.92127
Target:  5'- uGUUCGugcAGCUGgUCAUCGGAGUGcauGCCa -3'
miRNA:   3'- -CGAGC---UCGAUgGGUAGCUUCAC---CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.