miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 3' -55.2 NC_004065.1 + 66567 1.11 0.003897
Target:  5'- aGCUCGAGCUACCCAUCGAAGUGGCCGa -3'
miRNA:   3'- -CGAGCUCGAUGGGUAGCUUCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 48104 0.66 0.967442
Target:  5'- aCUCaGAgGCUGCagCCAUCuuGGUGGCCu -3'
miRNA:   3'- cGAG-CU-CGAUG--GGUAGcuUCACCGGc -5'
15867 3' -55.2 NC_004065.1 + 8128 0.66 0.973097
Target:  5'- aGC-CGGGCg--CCGUCGAGGUcgacgcagaaGGCCa -3'
miRNA:   3'- -CGaGCUCGaugGGUAGCUUCA----------CCGGc -5'
15867 3' -55.2 NC_004065.1 + 127464 0.66 0.975641
Target:  5'- -gUCGAuCUcCCCGggGAGGUGGUCGg -3'
miRNA:   3'- cgAGCUcGAuGGGUagCUUCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 176137 0.71 0.832514
Target:  5'- aCUCGAaCUGuuuCCCGUCGAcgccaacggAGUGGCCa -3'
miRNA:   3'- cGAGCUcGAU---GGGUAGCU---------UCACCGGc -5'
15867 3' -55.2 NC_004065.1 + 173942 0.68 0.915732
Target:  5'- uGCUgCGAGCagaaccucauCgCCAUCGggGUGGUCc -3'
miRNA:   3'- -CGA-GCUCGau--------G-GGUAGCuuCACCGGc -5'
15867 3' -55.2 NC_004065.1 + 195336 0.68 0.931665
Target:  5'- uGCUCcuGGGCggcGCCCGcgucUUGAAgGUGGCCa -3'
miRNA:   3'- -CGAG--CUCGa--UGGGU----AGCUU-CACCGGc -5'
15867 3' -55.2 NC_004065.1 + 202199 0.68 0.931665
Target:  5'- gGC-CGAGC-ACCCGcaggcacaUCGGAG-GGCUGg -3'
miRNA:   3'- -CGaGCUCGaUGGGU--------AGCUUCaCCGGC- -5'
15867 3' -55.2 NC_004065.1 + 30156 0.67 0.948512
Target:  5'- cGCUCGuGCUgugcgGCaCCGaCGAgugccugcggcgguGGUGGCCGu -3'
miRNA:   3'- -CGAGCuCGA-----UG-GGUaGCU--------------UCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 110698 0.66 0.964319
Target:  5'- uCUgGAGCUGCCCAgggCGAGa--GCCGc -3'
miRNA:   3'- cGAgCUCGAUGGGUa--GCUUcacCGGC- -5'
15867 3' -55.2 NC_004065.1 + 208023 0.67 0.960992
Target:  5'- uGC-CGgcGGCgaugaCCGUCGgcGUGGCCGu -3'
miRNA:   3'- -CGaGC--UCGaug--GGUAGCuuCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 79563 0.67 0.941153
Target:  5'- gGCgcagCGGcGCUuCCUGgcCGAGGUGGCCGa -3'
miRNA:   3'- -CGa---GCU-CGAuGGGUa-GCUUCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 20067 0.76 0.518318
Target:  5'- cGCUCGAGCcGCCCGUCG----GGCCa -3'
miRNA:   3'- -CGAGCUCGaUGGGUAGCuucaCCGGc -5'
15867 3' -55.2 NC_004065.1 + 140529 0.67 0.960992
Target:  5'- cGCUCaaGAGCUGCCgCAUC-AAGaaucGGCCc -3'
miRNA:   3'- -CGAG--CUCGAUGG-GUAGcUUCa---CCGGc -5'
15867 3' -55.2 NC_004065.1 + 200888 0.74 0.636246
Target:  5'- gGCUCG-GCUGCCCGUCGcgcuGGgcgaccGGCCu -3'
miRNA:   3'- -CGAGCuCGAUGGGUAGCu---UCa-----CCGGc -5'
15867 3' -55.2 NC_004065.1 + 201567 0.68 0.936522
Target:  5'- aCUCGAGCgaguaGCCU-UCGAAGccugccuuuccaUGGCCGc -3'
miRNA:   3'- cGAGCUCGa----UGGGuAGCUUC------------ACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 166436 0.67 0.960992
Target:  5'- uGCUCGucAGCcucuucuuCCUcUCGAuGGUGGCCGa -3'
miRNA:   3'- -CGAGC--UCGau------GGGuAGCU-UCACCGGC- -5'
15867 3' -55.2 NC_004065.1 + 67488 0.66 0.970366
Target:  5'- uCUCGAGa-GCCCGUCcGAGaccUGGCCc -3'
miRNA:   3'- cGAGCUCgaUGGGUAGcUUC---ACCGGc -5'
15867 3' -55.2 NC_004065.1 + 217163 0.72 0.753411
Target:  5'- cGCUCGuucucguguguGCU-CUCGUCGAGGUGGuuGg -3'
miRNA:   3'- -CGAGCu----------CGAuGGGUAGCUUCACCggC- -5'
15867 3' -55.2 NC_004065.1 + 143649 0.68 0.92127
Target:  5'- gGC-CGAGacCUACCC--CGAcGUGGCCGa -3'
miRNA:   3'- -CGaGCUC--GAUGGGuaGCUuCACCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.