Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15867 | 3' | -55.2 | NC_004065.1 | + | 8128 | 0.66 | 0.973097 |
Target: 5'- aGC-CGGGCg--CCGUCGAGGUcgacgcagaaGGCCa -3' miRNA: 3'- -CGaGCUCGaugGGUAGCUUCA----------CCGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 110698 | 0.66 | 0.964319 |
Target: 5'- uCUgGAGCUGCCCAgggCGAGa--GCCGc -3' miRNA: 3'- cGAgCUCGAUGGGUa--GCUUcacCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 93972 | 0.66 | 0.970366 |
Target: 5'- gGCUCGAuGCU-CCguUCGGcacccUGGCCGg -3' miRNA: 3'- -CGAGCU-CGAuGGguAGCUuc---ACCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 109557 | 0.67 | 0.953709 |
Target: 5'- -gUCGucAGCga-CC-UCGAGGUGGCCGc -3' miRNA: 3'- cgAGC--UCGaugGGuAGCUUCACCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 122875 | 0.72 | 0.762717 |
Target: 5'- cCUgCGAGCUGCCCAgcaGAuGGUGGCgGu -3' miRNA: 3'- cGA-GCUCGAUGGGUag-CU-UCACCGgC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 210255 | 0.67 | 0.957457 |
Target: 5'- aCUCGAaCUGCCCAUCGAucgacgacaacAGcauGCCGg -3' miRNA: 3'- cGAGCUcGAUGGGUAGCU-----------UCac-CGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 125241 | 0.69 | 0.891344 |
Target: 5'- aGCUCGA--UGCCCGucUCGAAGgccGCCGg -3' miRNA: 3'- -CGAGCUcgAUGGGU--AGCUUCac-CGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 149141 | 0.69 | 0.897139 |
Target: 5'- -gUCGAGUcGCCUgaucuucGUCGggG-GGCCGg -3' miRNA: 3'- cgAGCUCGaUGGG-------UAGCuuCaCCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 32827 | 0.67 | 0.957457 |
Target: 5'- -gUCGGGCcGCUCGUcCGAgaaGGUGaGCCGg -3' miRNA: 3'- cgAGCUCGaUGGGUA-GCU---UCAC-CGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 93342 | 0.69 | 0.903982 |
Target: 5'- aGCUCGAGCcgGCCCGcCGcc--GGCCa -3' miRNA: 3'- -CGAGCUCGa-UGGGUaGCuucaCCGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 151927 | 0.67 | 0.944697 |
Target: 5'- aGUUCGGGCUGCCCcucaaguccgagcacGUCGAGuaccucgacagguucGUGcGCCc -3' miRNA: 3'- -CGAGCUCGAUGGG---------------UAGCUU---------------CAC-CGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 134482 | 0.68 | 0.92127 |
Target: 5'- uGUUCGugcAGCUGgUCAUCGGAGUGcauGCCa -3' miRNA: 3'- -CGAGC---UCGAUgGGUAGCUUCAC---CGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 31016 | 0.68 | 0.926581 |
Target: 5'- uGUUCGAGCUugCCcUCGGccgcGGCCc -3' miRNA: 3'- -CGAGCUCGAugGGuAGCUuca-CCGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 62343 | 0.68 | 0.926581 |
Target: 5'- gGCUCGGGCUgGgUCGUCGGuuuucgacggcGGUGGCgGc -3' miRNA: 3'- -CGAGCUCGA-UgGGUAGCU-----------UCACCGgC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 224995 | 0.66 | 0.963343 |
Target: 5'- -gUCGAGCUgACCCAaguacaccgucuggUCGucGUGGuuGc -3' miRNA: 3'- cgAGCUCGA-UGGGU--------------AGCuuCACCggC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 47723 | 0.68 | 0.926581 |
Target: 5'- cCUCGAGCgugGCCUugaucacgggGUCaGAGGccaUGGCCGg -3' miRNA: 3'- cGAGCUCGa--UGGG----------UAG-CUUC---ACCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 223297 | 0.68 | 0.936522 |
Target: 5'- cGC-CGcGGCUACCCcgAUCGAAaUGGCUa -3' miRNA: 3'- -CGaGC-UCGAUGGG--UAGCUUcACCGGc -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 34377 | 0.67 | 0.957457 |
Target: 5'- cGCUCG-GCUGCCgGgaggCGAGGcgaaacUGGCgGg -3' miRNA: 3'- -CGAGCuCGAUGGgUa---GCUUC------ACCGgC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 28459 | 0.66 | 0.975641 |
Target: 5'- gGCuUCGAagGCUACUCGcUCGA-GUcGGCCGc -3' miRNA: 3'- -CG-AGCU--CGAUGGGU-AGCUuCA-CCGGC- -5' |
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15867 | 3' | -55.2 | NC_004065.1 | + | 114103 | 0.66 | 0.973097 |
Target: 5'- aGCcagCGAGCUGCCgGcCGA---GGCCGa -3' miRNA: 3'- -CGa--GCUCGAUGGgUaGCUucaCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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