miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 139628 0.66 0.791179
Target:  5'- uGCGGa-GCgGUGGCG-UGUCGACGa -3'
miRNA:   3'- cCGCCggUGgCGCCGCaACGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 195108 0.66 0.791179
Target:  5'- gGGCGucaGCuCGCCgGCGGUGUcGCCG-CaGCa -3'
miRNA:   3'- -CCGC---CG-GUGG-CGCCGCAaCGGCuG-CG- -5'
15867 5' -62.2 NC_004065.1 + 132171 0.66 0.791179
Target:  5'- uGGCGGCgAUgGCGGaCGagaacCUGACGUa -3'
miRNA:   3'- -CCGCCGgUGgCGCC-GCaac--GGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 203998 0.66 0.791179
Target:  5'- uGCGaGCCGCUgGUGGaCGacGCCGAgGCc -3'
miRNA:   3'- cCGC-CGGUGG-CGCC-GCaaCGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 210702 0.66 0.791179
Target:  5'- cGGCGGagACC-CGaGCGUU-UCGACGCc -3'
miRNA:   3'- -CCGCCggUGGcGC-CGCAAcGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 138241 0.66 0.791179
Target:  5'- aGGCGcucGCCGCCGUcgaggagggucgGGUGUccgagGCgGACGUc -3'
miRNA:   3'- -CCGC---CGGUGGCG------------CCGCAa----CGgCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 7329 0.66 0.791179
Target:  5'- cGGUGGUaccggaCGCGGCGgaGCCGuuCGg -3'
miRNA:   3'- -CCGCCGgug---GCGCCGCaaCGGCu-GCg -5'
15867 5' -62.2 NC_004065.1 + 81697 0.66 0.791179
Target:  5'- aGGaCGGCgaCACCGUgGGCGaccuggcgGCCGAgGUg -3'
miRNA:   3'- -CC-GCCG--GUGGCG-CCGCaa------CGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 217641 0.66 0.790339
Target:  5'- cGCGGCUAUCGUGcCGUuaucuacuguucgUGUCGAUGUu -3'
miRNA:   3'- cCGCCGGUGGCGCcGCA-------------ACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 171410 0.66 0.787809
Target:  5'- cGGCGacuCCGCCGCGcGCGUcgaucucgacuccGCCGuCGUc -3'
miRNA:   3'- -CCGCc--GGUGGCGC-CGCAa------------CGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 22067 0.66 0.782718
Target:  5'- cGGuCGGUCGCgGCGGCccaacCCGcGCGCu -3'
miRNA:   3'- -CC-GCCGGUGgCGCCGcaac-GGC-UGCG- -5'
15867 5' -62.2 NC_004065.1 + 108933 0.66 0.782718
Target:  5'- aGCGcGCUgcGCCuGCGGCaGUacGCCGACGa -3'
miRNA:   3'- cCGC-CGG--UGG-CGCCG-CAa-CGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 90143 0.66 0.782718
Target:  5'- cGCGGCCACCuCGucCGUccUGCCGcCGg -3'
miRNA:   3'- cCGCCGGUGGcGCc-GCA--ACGGCuGCg -5'
15867 5' -62.2 NC_004065.1 + 18076 0.66 0.782718
Target:  5'- uGGCGGCagcgacCGCCGCaGCcucGUgGCCGGCa- -3'
miRNA:   3'- -CCGCCG------GUGGCGcCG---CAaCGGCUGcg -5'
15867 5' -62.2 NC_004065.1 + 101872 0.66 0.782718
Target:  5'- uGGCGGCC-CgGCGaGCGUaacGCCa--GCa -3'
miRNA:   3'- -CCGCCGGuGgCGC-CGCAa--CGGcugCG- -5'
15867 5' -62.2 NC_004065.1 + 125643 0.66 0.782718
Target:  5'- -aCGaGCCGCCGCguGGCGUgUGCC-AUGUg -3'
miRNA:   3'- ccGC-CGGUGGCG--CCGCA-ACGGcUGCG- -5'
15867 5' -62.2 NC_004065.1 + 198507 0.66 0.782718
Target:  5'- gGGUaGCC-CCGCGGCacGUcGCaCGAgGCg -3'
miRNA:   3'- -CCGcCGGuGGCGCCG--CAaCG-GCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 88924 0.66 0.782718
Target:  5'- cGGCGauGCCGCugaaggCGCGGCGguaGCUGGC-Ca -3'
miRNA:   3'- -CCGC--CGGUG------GCGCCGCaa-CGGCUGcG- -5'
15867 5' -62.2 NC_004065.1 + 28715 0.66 0.780158
Target:  5'- gGGCGGagauCCuguccgaggaggagACCGCGGUG--GCgGACGCc -3'
miRNA:   3'- -CCGCC----GG--------------UGGCGCCGCaaCGgCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 174061 0.66 0.777586
Target:  5'- uGGCGGUgucguccccgugcugCACCugcucaccaaguGCGGCuUcuccgacuucUGCCGGCGCg -3'
miRNA:   3'- -CCGCCG---------------GUGG------------CGCCGcA----------ACGGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.