miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 113438 0.66 0.756673
Target:  5'- aGCGGCgGCCGgGGgGcccGCCG-UGCc -3'
miRNA:   3'- cCGCCGgUGGCgCCgCaa-CGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 115992 0.66 0.763709
Target:  5'- aGGCGcucguccGCCgacgugcGCCGCGGgGgcagcucucUGCCGACGg -3'
miRNA:   3'- -CCGC-------CGG-------UGGCGCCgCa--------ACGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 120893 0.66 0.747795
Target:  5'- gGGCGGCguCuCGCGGCGacaGCaccCGCa -3'
miRNA:   3'- -CCGCCGguG-GCGCCGCaa-CGgcuGCG- -5'
15867 5' -62.2 NC_004065.1 + 47297 0.66 0.756673
Target:  5'- cGGUGGCC-CCgGCGucgccCGUgagGCCGAucCGCg -3'
miRNA:   3'- -CCGCCGGuGG-CGCc----GCAa--CGGCU--GCG- -5'
15867 5' -62.2 NC_004065.1 + 75072 0.66 0.764585
Target:  5'- aGGCGGCUgcucauGCCGCuccugagguagaGGCaggagacGUUGCgcgaGACGCg -3'
miRNA:   3'- -CCGCCGG------UGGCG------------CCG-------CAACGg---CUGCG- -5'
15867 5' -62.2 NC_004065.1 + 32938 0.66 0.747795
Target:  5'- cGGuCGGCUcCCGCGcggauGCGggcGUCGACGUc -3'
miRNA:   3'- -CC-GCCGGuGGCGC-----CGCaa-CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 42074 0.66 0.756673
Target:  5'- uGUGGCUgACCucgcugauGUGcGCGUcGCCGGCGCc -3'
miRNA:   3'- cCGCCGG-UGG--------CGC-CGCAaCGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 1021 0.66 0.765459
Target:  5'- aGCGuGCC-CCGCaGGCaGgcGCagCGACGCa -3'
miRNA:   3'- cCGC-CGGuGGCG-CCG-CaaCG--GCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 203998 0.66 0.791179
Target:  5'- uGCGaGCCGCUgGUGGaCGacGCCGAgGCc -3'
miRNA:   3'- cCGC-CGGUGG-CGCC-GCaaCGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 229438 0.66 0.756673
Target:  5'- uGGUcuGCCACCacgggGUGGCGcUGCCGccagccccguuGCGCg -3'
miRNA:   3'- -CCGc-CGGUGG-----CGCCGCaACGGC-----------UGCG- -5'
15867 5' -62.2 NC_004065.1 + 55110 0.66 0.747795
Target:  5'- -cUGGCgC-CCGCGGCGgcGCCGAg-- -3'
miRNA:   3'- ccGCCG-GuGGCGCCGCaaCGGCUgcg -5'
15867 5' -62.2 NC_004065.1 + 127139 0.66 0.756673
Target:  5'- cGGCGGCgcUACCgGCGGCGg---CGAuCGCc -3'
miRNA:   3'- -CCGCCG--GUGG-CGCCGCaacgGCU-GCG- -5'
15867 5' -62.2 NC_004065.1 + 224278 0.66 0.756673
Target:  5'- uGCGGagCAgCGCuagcGCGUUGCCGAUcaGCa -3'
miRNA:   3'- cCGCCg-GUgGCGc---CGCAACGGCUG--CG- -5'
15867 5' -62.2 NC_004065.1 + 115041 0.66 0.747795
Target:  5'- cGCGGCCGCCaG-GGCcgaggGCaaCGGCGCg -3'
miRNA:   3'- cCGCCGGUGG-CgCCGcaa--CG--GCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 17953 0.66 0.765459
Target:  5'- cGCaGGUCGCCGgaCGGuCGUccgucUGCCG-CGCg -3'
miRNA:   3'- cCG-CCGGUGGC--GCC-GCA-----ACGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 65659 0.66 0.747795
Target:  5'- cGCuGCCGCCGCaGGaagauCCGACGCc -3'
miRNA:   3'- cCGcCGGUGGCG-CCgcaacGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 46170 0.66 0.765459
Target:  5'- cGGCcacGGCCAaacaCGCgacGGCGUggggGCCGAacgacaaacacCGCg -3'
miRNA:   3'- -CCG---CCGGUg---GCG---CCGCAa---CGGCU-----------GCG- -5'
15867 5' -62.2 NC_004065.1 + 109419 0.66 0.747795
Target:  5'- aGGUGGCUcuacaACCaGCcGCGcUGgCGGCGCg -3'
miRNA:   3'- -CCGCCGG-----UGG-CGcCGCaACgGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 138152 0.66 0.765459
Target:  5'- aGCGGCCG--GCGGUGUUuacGCUgGugGCg -3'
miRNA:   3'- cCGCCGGUggCGCCGCAA---CGG-CugCG- -5'
15867 5' -62.2 NC_004065.1 + 226127 0.66 0.756673
Target:  5'- cGGgGGUCGCCGCG-UGgagGCUGGCa- -3'
miRNA:   3'- -CCgCCGGUGGCGCcGCaa-CGGCUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.