miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 18076 0.66 0.782718
Target:  5'- uGGCGGCagcgacCGCCGCaGCcucGUgGCCGGCa- -3'
miRNA:   3'- -CCGCCG------GUGGCGcCG---CAaCGGCUGcg -5'
15867 5' -62.2 NC_004065.1 + 224278 0.66 0.756673
Target:  5'- uGCGGagCAgCGCuagcGCGUUGCCGAUcaGCa -3'
miRNA:   3'- cCGCCg-GUgGCGc---CGCAACGGCUG--CG- -5'
15867 5' -62.2 NC_004065.1 + 47389 0.66 0.765459
Target:  5'- cGCGGCCGCCGuCGGCa----CGAgaGCg -3'
miRNA:   3'- cCGCCGGUGGC-GCCGcaacgGCUg-CG- -5'
15867 5' -62.2 NC_004065.1 + 212719 0.66 0.747795
Target:  5'- aGGCGGCU-CCGaGGcCGUUGucuCCGcCGCa -3'
miRNA:   3'- -CCGCCGGuGGCgCC-GCAAC---GGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 75072 0.66 0.764585
Target:  5'- aGGCGGCUgcucauGCCGCuccugagguagaGGCaggagacGUUGCgcgaGACGCg -3'
miRNA:   3'- -CCGCCGG------UGGCG------------CCG-------CAACGg---CUGCG- -5'
15867 5' -62.2 NC_004065.1 + 210702 0.66 0.791179
Target:  5'- cGGCGGagACC-CGaGCGUU-UCGACGCc -3'
miRNA:   3'- -CCGCCggUGGcGC-CGCAAcGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 203998 0.66 0.791179
Target:  5'- uGCGaGCCGCUgGUGGaCGacGCCGAgGCc -3'
miRNA:   3'- cCGC-CGGUGG-CGCC-GCaaCGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 195108 0.66 0.791179
Target:  5'- gGGCGucaGCuCGCCgGCGGUGUcGCCG-CaGCa -3'
miRNA:   3'- -CCGC---CG-GUGG-CGCCGCAaCGGCuG-CG- -5'
15867 5' -62.2 NC_004065.1 + 17953 0.66 0.765459
Target:  5'- cGCaGGUCGCCGgaCGGuCGUccgucUGCCG-CGCg -3'
miRNA:   3'- cCG-CCGGUGGC--GCC-GCA-----ACGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 139628 0.66 0.791179
Target:  5'- uGCGGa-GCgGUGGCG-UGUCGACGa -3'
miRNA:   3'- cCGCCggUGgCGCCGCaACGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 46170 0.66 0.765459
Target:  5'- cGGCcacGGCCAaacaCGCgacGGCGUggggGCCGAacgacaaacacCGCg -3'
miRNA:   3'- -CCG---CCGGUg---GCG---CCGCAa---CGGCU-----------GCG- -5'
15867 5' -62.2 NC_004065.1 + 138152 0.66 0.765459
Target:  5'- aGCGGCCG--GCGGUGUUuacGCUgGugGCg -3'
miRNA:   3'- cCGCCGGUggCGCCGCAA---CGG-CugCG- -5'
15867 5' -62.2 NC_004065.1 + 65659 0.66 0.747795
Target:  5'- cGCuGCCGCCGCaGGaagauCCGACGCc -3'
miRNA:   3'- cCGcCGGUGGCG-CCgcaacGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 55110 0.66 0.747795
Target:  5'- -cUGGCgC-CCGCGGCGgcGCCGAg-- -3'
miRNA:   3'- ccGCCG-GuGGCGCCGCaaCGGCUgcg -5'
15867 5' -62.2 NC_004065.1 + 226127 0.66 0.756673
Target:  5'- cGGgGGUCGCCGCG-UGgagGCUGGCa- -3'
miRNA:   3'- -CCgCCGGUGGCGCcGCaa-CGGCUGcg -5'
15867 5' -62.2 NC_004065.1 + 125643 0.66 0.782718
Target:  5'- -aCGaGCCGCCGCguGGCGUgUGCC-AUGUg -3'
miRNA:   3'- ccGC-CGGUGGCG--CCGCA-ACGGcUGCG- -5'
15867 5' -62.2 NC_004065.1 + 117399 0.66 0.774143
Target:  5'- -uCGGCCGCgcgcgcugggcuCGCGGCGcggaguggcaGCCGAuCGCg -3'
miRNA:   3'- ccGCCGGUG------------GCGCCGCaa--------CGGCU-GCG- -5'
15867 5' -62.2 NC_004065.1 + 113438 0.66 0.756673
Target:  5'- aGCGGCgGCCGgGGgGcccGCCG-UGCc -3'
miRNA:   3'- cCGCCGgUGGCgCCgCaa-CGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 138241 0.66 0.791179
Target:  5'- aGGCGcucGCCGCCGUcgaggagggucgGGUGUccgagGCgGACGUc -3'
miRNA:   3'- -CCGC---CGGUGGCG------------CCGCAa----CGgCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 22910 0.66 0.774143
Target:  5'- cGCGGUCAgUgGCGGCG--GUCGGCGg -3'
miRNA:   3'- cCGCCGGU-GgCGCCGCaaCGGCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.