miRNA display CGI


Results 41 - 60 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 41057 0.66 0.774143
Target:  5'- --gGGCCG-CGCGGCGacgaaGCCGAagaGCu -3'
miRNA:   3'- ccgCCGGUgGCGCCGCaa---CGGCUg--CG- -5'
15867 5' -62.2 NC_004065.1 + 135064 0.66 0.774143
Target:  5'- cGCGGCaGCCGCGGagcggGCCc-CGCa -3'
miRNA:   3'- cCGCCGgUGGCGCCgcaa-CGGcuGCG- -5'
15867 5' -62.2 NC_004065.1 + 132074 0.66 0.773279
Target:  5'- cGCGGuagguccCCACCGCuGCcacgccggUGCCGgACGCg -3'
miRNA:   3'- cCGCC-------GGUGGCGcCGca------ACGGC-UGCG- -5'
15867 5' -62.2 NC_004065.1 + 32938 0.66 0.747795
Target:  5'- cGGuCGGCUcCCGCGcggauGCGggcGUCGACGUc -3'
miRNA:   3'- -CC-GCCGGuGGCGC-----CGCaa-CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 229438 0.66 0.756673
Target:  5'- uGGUcuGCCACCacgggGUGGCGcUGCCGccagccccguuGCGCg -3'
miRNA:   3'- -CCGc-CGGUGG-----CGCCGCaACGGC-----------UGCG- -5'
15867 5' -62.2 NC_004065.1 + 120893 0.66 0.747795
Target:  5'- gGGCGGCguCuCGCGGCGacaGCaccCGCa -3'
miRNA:   3'- -CCGCCGguG-GCGCCGCaa-CGgcuGCG- -5'
15867 5' -62.2 NC_004065.1 + 226127 0.66 0.756673
Target:  5'- cGGgGGUCGCCGCG-UGgagGCUGGCa- -3'
miRNA:   3'- -CCgCCGGUGGCGCcGCaa-CGGCUGcg -5'
15867 5' -62.2 NC_004065.1 + 155368 0.66 0.777586
Target:  5'- cGGCGGaCgCGCCGCGGUccggaccucagacccGgguaGCgGugGCg -3'
miRNA:   3'- -CCGCC-G-GUGGCGCCG---------------Caa--CGgCugCG- -5'
15867 5' -62.2 NC_004065.1 + 139768 0.66 0.765459
Target:  5'- cGUGGUCACucugcucuCGCgGGCcUUcGCCGACGCc -3'
miRNA:   3'- cCGCCGGUG--------GCG-CCGcAA-CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 195108 0.66 0.791179
Target:  5'- gGGCGucaGCuCGCCgGCGGUGUcGCCG-CaGCa -3'
miRNA:   3'- -CCGC---CG-GUGG-CGCCGCAaCGGCuG-CG- -5'
15867 5' -62.2 NC_004065.1 + 104563 0.66 0.747795
Target:  5'- uGCGGCCGCUGUG-Cac-GCCG-CGCa -3'
miRNA:   3'- cCGCCGGUGGCGCcGcaaCGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 177485 0.66 0.774143
Target:  5'- cGGgGGCgCACgGCGGgGccGCCGGgGg -3'
miRNA:   3'- -CCgCCG-GUGgCGCCgCaaCGGCUgCg -5'
15867 5' -62.2 NC_004065.1 + 28715 0.66 0.780158
Target:  5'- gGGCGGagauCCuguccgaggaggagACCGCGGUG--GCgGACGCc -3'
miRNA:   3'- -CCGCC----GG--------------UGGCGCCGCaaCGgCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 203998 0.66 0.791179
Target:  5'- uGCGaGCCGCUgGUGGaCGacGCCGAgGCc -3'
miRNA:   3'- cCGC-CGGUGG-CGCC-GCaaCGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 212719 0.66 0.747795
Target:  5'- aGGCGGCU-CCGaGGcCGUUGucuCCGcCGCa -3'
miRNA:   3'- -CCGCCGGuGGCgCC-GCAAC---GGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 221762 0.66 0.747795
Target:  5'- uGCGGUUGCgGCGacgguaucgucuGCGUUGUCGGgGCc -3'
miRNA:   3'- cCGCCGGUGgCGC------------CGCAACGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 153257 0.66 0.747795
Target:  5'- cGGCGGCgaugCGCCGgacgaugacgaGGCc--GCCGGCGCc -3'
miRNA:   3'- -CCGCCG----GUGGCg----------CCGcaaCGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 198507 0.66 0.782718
Target:  5'- gGGUaGCC-CCGCGGCacGUcGCaCGAgGCg -3'
miRNA:   3'- -CCGcCGGuGGCGCCG--CAaCG-GCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 153356 0.66 0.756673
Target:  5'- cGGCGG-CGCCGaCGcgaucCGUUucgaGCCGAUGCu -3'
miRNA:   3'- -CCGCCgGUGGC-GCc----GCAA----CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 90143 0.66 0.782718
Target:  5'- cGCGGCCACCuCGucCGUccUGCCGcCGg -3'
miRNA:   3'- cCGCCGGUGGcGCc-GCA--ACGGCuGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.