miRNA display CGI


Results 61 - 80 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 125643 0.66 0.782718
Target:  5'- -aCGaGCCGCCGCguGGCGUgUGCC-AUGUg -3'
miRNA:   3'- ccGC-CGGUGGCG--CCGCA-ACGGcUGCG- -5'
15867 5' -62.2 NC_004065.1 + 47389 0.66 0.765459
Target:  5'- cGCGGCCGCCGuCGGCa----CGAgaGCg -3'
miRNA:   3'- cCGCCGGUGGC-GCCGcaacgGCUg-CG- -5'
15867 5' -62.2 NC_004065.1 + 113438 0.66 0.756673
Target:  5'- aGCGGCgGCCGgGGgGcccGCCG-UGCc -3'
miRNA:   3'- cCGCCGgUGGCgCCgCaa-CGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 117399 0.66 0.774143
Target:  5'- -uCGGCCGCgcgcgcugggcuCGCGGCGcggaguggcaGCCGAuCGCg -3'
miRNA:   3'- ccGCCGGUG------------GCGCCGCaa--------CGGCU-GCG- -5'
15867 5' -62.2 NC_004065.1 + 135064 0.66 0.774143
Target:  5'- cGCGGCaGCCGCGGagcggGCCc-CGCa -3'
miRNA:   3'- cCGCCGgUGGCGCCgcaa-CGGcuGCG- -5'
15867 5' -62.2 NC_004065.1 + 22910 0.66 0.774143
Target:  5'- cGCGGUCAgUgGCGGCG--GUCGGCGg -3'
miRNA:   3'- cCGCCGGU-GgCGCCGCaaCGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 101262 0.67 0.702248
Target:  5'- cGGCGcccucaacGCUGCCGCuGcCGcUGCCGACGg -3'
miRNA:   3'- -CCGC--------CGGUGGCGcC-GCaACGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 114803 0.67 0.702248
Target:  5'- cGGCGGUaagcaGCC-CGGCGguaUGCCccguCGCg -3'
miRNA:   3'- -CCGCCGg----UGGcGCCGCa--ACGGcu--GCG- -5'
15867 5' -62.2 NC_004065.1 + 48638 0.67 0.715167
Target:  5'- gGGCGcGaCCAgcgaCGUGGCGaagaugggaucgaGCCGACGCa -3'
miRNA:   3'- -CCGC-C-GGUg---GCGCCGCaa-----------CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 176167 0.67 0.692959
Target:  5'- aGUGGCCAUCcCGGCGcgaCCGcCGCg -3'
miRNA:   3'- cCGCCGGUGGcGCCGCaacGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 176731 0.67 0.720668
Target:  5'- cGUGuGUUggACCGCGGUGUUGUggcgaaucagUGACGCg -3'
miRNA:   3'- cCGC-CGG--UGGCGCCGCAACG----------GCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 24128 0.67 0.720668
Target:  5'- cGGCGGCCcauCCGUcaagGGCGa---CGACGUc -3'
miRNA:   3'- -CCGCCGGu--GGCG----CCGCaacgGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 202404 0.67 0.720668
Target:  5'- gGGCGGaCGaaGCGgaGCGgaGCCGAgGCa -3'
miRNA:   3'- -CCGCCgGUggCGC--CGCaaCGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 127223 0.67 0.728876
Target:  5'- cGGCGGCCgcgaggaucgggcGCgGUGGCGggGaugaUGAgCGCg -3'
miRNA:   3'- -CCGCCGG-------------UGgCGCCGCaaCg---GCU-GCG- -5'
15867 5' -62.2 NC_004065.1 + 28994 0.67 0.692959
Target:  5'- -cCGGCgGCgGUGGCGaggcGCCGcGCGCa -3'
miRNA:   3'- ccGCCGgUGgCGCCGCaa--CGGC-UGCG- -5'
15867 5' -62.2 NC_004065.1 + 103779 0.67 0.702248
Target:  5'- gGGCGGCUcgauccCCGCacgGGCG-UGaaGACGCc -3'
miRNA:   3'- -CCGCCGGu-----GGCG---CCGCaACggCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 56542 0.67 0.720668
Target:  5'- uGGCGGCgaCACCGCaGGC---GCUGAUGa -3'
miRNA:   3'- -CCGCCG--GUGGCG-CCGcaaCGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 38169 0.67 0.702248
Target:  5'- gGGC-GCCAUCGCGGCGauaGUCG-CGg -3'
miRNA:   3'- -CCGcCGGUGGCGCCGCaa-CGGCuGCg -5'
15867 5' -62.2 NC_004065.1 + 106150 0.67 0.692959
Target:  5'- -aCGGCgCACCuGCGGCGcgUGCgGA-GCg -3'
miRNA:   3'- ccGCCG-GUGG-CGCCGCa-ACGgCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 229504 0.67 0.718837
Target:  5'- gGGCGcGCCACCGCGuaGUaGacucccagaaaaCGGCGUc -3'
miRNA:   3'- -CCGC-CGGUGGCGCcgCAaCg-----------GCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.