miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 66603 1.12 0.000888
Target:  5'- cGGCGGCCACCGCGGCGUUGCCGACGCu -3'
miRNA:   3'- -CCGCCGGUGGCGCCGCAACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 153641 0.87 0.046507
Target:  5'- cGGCGGCgAgcucauCCGCGGCGgcGCCGGCGCg -3'
miRNA:   3'- -CCGCCGgU------GGCGCCGCaaCGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 78878 0.84 0.084434
Target:  5'- cGCGGUCGCCgacgaucaucGCGGCGUUGCCGcCGCc -3'
miRNA:   3'- cCGCCGGUGG----------CGCCGCAACGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 208026 0.83 0.093132
Target:  5'- cGGCGGCgaugACCGuCGGCGUgGCCGugGCg -3'
miRNA:   3'- -CCGCCGg---UGGC-GCCGCAaCGGCugCG- -5'
15867 5' -62.2 NC_004065.1 + 35210 0.82 0.113131
Target:  5'- uGGCGGCCACCGCcacGGCGUUcagggGCuCGACGa -3'
miRNA:   3'- -CCGCCGGUGGCG---CCGCAA-----CG-GCUGCg -5'
15867 5' -62.2 NC_004065.1 + 168618 0.81 0.118726
Target:  5'- aGCGGCUgcuggcgcugguGCCGCgGGCGgaGCCGGCGCg -3'
miRNA:   3'- cCGCCGG------------UGGCG-CCGCaaCGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 48113 0.8 0.139395
Target:  5'- cGGUGGCgGCgGCGGUgggaccucgcgcacGUUGCCGACGUg -3'
miRNA:   3'- -CCGCCGgUGgCGCCG--------------CAACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 154164 0.8 0.147221
Target:  5'- cGGCGGCgGCgGCGGCuGUUGCUGGCu- -3'
miRNA:   3'- -CCGCCGgUGgCGCCG-CAACGGCUGcg -5'
15867 5' -62.2 NC_004065.1 + 109573 0.8 0.15435
Target:  5'- aGGUGGCCGCCugucuccugGCGGCGUaucagGCCG-CGCu -3'
miRNA:   3'- -CCGCCGGUGG---------CGCCGCAa----CGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 118187 0.79 0.16179
Target:  5'- cGGCuGCCGCCGUucgguuGGCGcgGCUGACGCa -3'
miRNA:   3'- -CCGcCGGUGGCG------CCGCaaCGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 65188 0.79 0.163317
Target:  5'- cGGCGGCCAUCGCGGUuuccuccucggaaacGgccagagUGCCGGCGg -3'
miRNA:   3'- -CCGCCGGUGGCGCCG---------------Ca------ACGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 152047 0.79 0.169552
Target:  5'- gGGCGGCuCGCCGCGGCcagcgucucGggGCuCGACGUc -3'
miRNA:   3'- -CCGCCG-GUGGCGCCG---------CaaCG-GCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 108808 0.79 0.169552
Target:  5'- uGGCGGCCguucaGCCGCGGCaacagGCUGACGg -3'
miRNA:   3'- -CCGCCGG-----UGGCGCCGcaa--CGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 66633 0.78 0.190428
Target:  5'- uGCGGCgCugCGUGGCGgacgcGCUGACGCu -3'
miRNA:   3'- cCGCCG-GugGCGCCGCaa---CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 130087 0.78 0.194866
Target:  5'- aGCcGCCGCCGCGGCGgu-CCGGCGUc -3'
miRNA:   3'- cCGcCGGUGGCGCCGCaacGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 198033 0.78 0.198025
Target:  5'- cGCGGUCGCCgGCGGUuccaaggggauggaGUUGCgGACGCa -3'
miRNA:   3'- cCGCCGGUGG-CGCCG--------------CAACGgCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 99539 0.77 0.213528
Target:  5'- uGGuCGGCgcucccgucuCGCCGCGGCGgacgGCCGugGUg -3'
miRNA:   3'- -CC-GCCG----------GUGGCGCCGCaa--CGGCugCG- -5'
15867 5' -62.2 NC_004065.1 + 200444 0.77 0.217934
Target:  5'- cGCGGUCACCGCGGCc--GCCGucagauagcgggaGCGCg -3'
miRNA:   3'- cCGCCGGUGGCGCCGcaaCGGC-------------UGCG- -5'
15867 5' -62.2 NC_004065.1 + 120115 0.77 0.220414
Target:  5'- cGGCGGCCGCgGCGGaCGagccgggaccccCCGACGCg -3'
miRNA:   3'- -CCGCCGGUGgCGCC-GCaac---------GGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 114330 0.77 0.223423
Target:  5'- uGGCGGCCGCCGCGaaacagaacGcCGUacCCGGCGCu -3'
miRNA:   3'- -CCGCCGGUGGCGC---------C-GCAacGGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.