miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 120412 0.77 0.228515
Target:  5'- uGGUGGgCACCGCGGCccgGggGUCGAgCGCg -3'
miRNA:   3'- -CCGCCgGUGGCGCCG---CaaCGGCU-GCG- -5'
15867 5' -62.2 NC_004065.1 + 130058 0.77 0.233182
Target:  5'- cGCGGCCcgagcacGCCGCGGCGgugGUCGACu- -3'
miRNA:   3'- cCGCCGG-------UGGCGCCGCaa-CGGCUGcg -5'
15867 5' -62.2 NC_004065.1 + 52658 0.77 0.233705
Target:  5'- -uUGGCCGCCGCuGGCGgugGCgGugGCg -3'
miRNA:   3'- ccGCCGGUGGCG-CCGCaa-CGgCugCG- -5'
15867 5' -62.2 NC_004065.1 + 199517 0.76 0.249871
Target:  5'- cGGCGGCCGCCacGUGcGCGcaGCCgGGCGCc -3'
miRNA:   3'- -CCGCCGGUGG--CGC-CGCaaCGG-CUGCG- -5'
15867 5' -62.2 NC_004065.1 + 105928 0.76 0.249871
Target:  5'- aGCaacGCCACCGCGuGCGgggggUGCuCGACGCa -3'
miRNA:   3'- cCGc--CGGUGGCGC-CGCa----ACG-GCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 171967 0.76 0.272848
Target:  5'- uGGCGGCgGCgGCGGCGgagggGUCGuCGUg -3'
miRNA:   3'- -CCGCCGgUGgCGCCGCaa---CGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 79631 0.76 0.272848
Target:  5'- cGCGGaCGCUGCgGGCGUgcgUGUCGGCGCu -3'
miRNA:   3'- cCGCCgGUGGCG-CCGCA---ACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 151357 0.75 0.278851
Target:  5'- -uCGGgCGCCGCGGCGccgGCCGcuGCGCu -3'
miRNA:   3'- ccGCCgGUGGCGCCGCaa-CGGC--UGCG- -5'
15867 5' -62.2 NC_004065.1 + 184483 0.75 0.278851
Target:  5'- gGGCGGCUgccgccgccGCCGCGGCGccgGgUGGCGUa -3'
miRNA:   3'- -CCGCCGG---------UGGCGCCGCaa-CgGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 119851 0.75 0.281281
Target:  5'- cGCGGCCGCCGCagaGGUcggggaagacGUcccugagcgagaacuUGCCGGCGCg -3'
miRNA:   3'- cCGCCGGUGGCG---CCG----------CA---------------ACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 102049 0.75 0.284959
Target:  5'- cGCGGCgGCCG-GGCGUUagcGCCGAagaGCa -3'
miRNA:   3'- cCGCCGgUGGCgCCGCAA---CGGCUg--CG- -5'
15867 5' -62.2 NC_004065.1 + 89044 0.74 0.317081
Target:  5'- cGGUGGCCACCa-GGaUGUUGCaguaGACGCu -3'
miRNA:   3'- -CCGCCGGUGGcgCC-GCAACGg---CUGCG- -5'
15867 5' -62.2 NC_004065.1 + 146598 0.74 0.319765
Target:  5'- gGGUGGCCaucgggGCCGuCGGCGggGCCGugucuucgguggugaACGCc -3'
miRNA:   3'- -CCGCCGG------UGGC-GCCGCaaCGGC---------------UGCG- -5'
15867 5' -62.2 NC_004065.1 + 52542 0.74 0.323824
Target:  5'- cGGCGGCCccGCCGUGcGCccccGCCGAgCGCa -3'
miRNA:   3'- -CCGCCGG--UGGCGC-CGcaa-CGGCU-GCG- -5'
15867 5' -62.2 NC_004065.1 + 63878 0.74 0.323824
Target:  5'- cGGCGccGCUGCCGcCGGCGccgacgucucUGCCGACGUg -3'
miRNA:   3'- -CCGC--CGGUGGC-GCCGCa---------ACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 128413 0.74 0.343978
Target:  5'- aGCGGCaGCgGCGGCGgcGCCGccaccgagucugaGCGCg -3'
miRNA:   3'- cCGCCGgUGgCGCCGCaaCGGC-------------UGCG- -5'
15867 5' -62.2 NC_004065.1 + 197720 0.74 0.351855
Target:  5'- cGCGGCCGCCGUgagcuucaccuuGGCGaucGCCGACu- -3'
miRNA:   3'- cCGCCGGUGGCG------------CCGCaa-CGGCUGcg -5'
15867 5' -62.2 NC_004065.1 + 103319 0.74 0.351855
Target:  5'- aGCGGUCGCCGCaGGCGUagGUCGAaGUa -3'
miRNA:   3'- cCGCCGGUGGCG-CCGCAa-CGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 172265 0.73 0.359126
Target:  5'- aGGCGGCCACC-UGGCGcucgUGCCGuuACa- -3'
miRNA:   3'- -CCGCCGGUGGcGCCGCa---ACGGC--UGcg -5'
15867 5' -62.2 NC_004065.1 + 78670 0.73 0.359126
Target:  5'- aGCGGCCggcGCCGCGGCGc--CCGAgaGCg -3'
miRNA:   3'- cCGCCGG---UGGCGCCGCaacGGCUg-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.