miRNA display CGI


Results 41 - 60 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 105848 0.73 0.366502
Target:  5'- cGGCGGCCugCGCGcacacccuggaGuCGgUGuuGACGCu -3'
miRNA:   3'- -CCGCCGGugGCGC-----------C-GCaACggCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 4414 0.73 0.366502
Target:  5'- cGGUGGCCACgGCGG----GCCuGACGCu -3'
miRNA:   3'- -CCGCCGGUGgCGCCgcaaCGG-CUGCG- -5'
15867 5' -62.2 NC_004065.1 + 167415 0.73 0.366502
Target:  5'- cGCGGCUgcuGCCGcCGGCGgggGCggCGGCGCu -3'
miRNA:   3'- cCGCCGG---UGGC-GCCGCaa-CG--GCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 101427 0.73 0.367245
Target:  5'- gGGCGGCUGgCGCGuGCGgaugcgccuucgccGCCGACGUc -3'
miRNA:   3'- -CCGCCGGUgGCGC-CGCaa------------CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 35572 0.73 0.369482
Target:  5'- aGGCGGCCACaggcggaaucgguggCGuCGGCGgUGUCGGUGCg -3'
miRNA:   3'- -CCGCCGGUG---------------GC-GCCGCaACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 148850 0.73 0.373982
Target:  5'- aGGCGGCCGCCGCgaucgaggaGGCGgcgGCgGGgGg -3'
miRNA:   3'- -CCGCCGGUGGCG---------CCGCaa-CGgCUgCg -5'
15867 5' -62.2 NC_004065.1 + 80797 0.73 0.373982
Target:  5'- cGGCGGCgGCgGCGGCGgcaGCgGGaGCa -3'
miRNA:   3'- -CCGCCGgUGgCGCCGCaa-CGgCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 123546 0.73 0.378519
Target:  5'- gGGUGGCCAgCGCcGCGUccucgucguacggGUCGACGCc -3'
miRNA:   3'- -CCGCCGGUgGCGcCGCAa------------CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 99939 0.73 0.381564
Target:  5'- cGcCGGaCCGCCGCGGCGgcgGCUGcUGCu -3'
miRNA:   3'- cC-GCC-GGUGGCGCCGCaa-CGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 28471 0.73 0.381564
Target:  5'- aGCGGCgaGuuGUGGCGUcugGCCGACaGCg -3'
miRNA:   3'- cCGCCGg-UggCGCCGCAa--CGGCUG-CG- -5'
15867 5' -62.2 NC_004065.1 + 152816 0.73 0.388475
Target:  5'- cGUGGCCAUCGCcgugcggGGCGccGCCG-CGCa -3'
miRNA:   3'- cCGCCGGUGGCG-------CCGCaaCGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 179678 0.73 0.389248
Target:  5'- gGGgGGCUcgggAUCGCGGCGgugGCC-ACGCg -3'
miRNA:   3'- -CCgCCGG----UGGCGCCGCaa-CGGcUGCG- -5'
15867 5' -62.2 NC_004065.1 + 150924 0.73 0.389248
Target:  5'- cGGCGGCUcCgGCGG-GUUGUCGAgGUa -3'
miRNA:   3'- -CCGCCGGuGgCGCCgCAACGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 168561 0.73 0.389248
Target:  5'- aGCGGCgGCgGCGGCGacaGCgGGCGUc -3'
miRNA:   3'- cCGCCGgUGgCGCCGCaa-CGgCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 68158 0.73 0.389248
Target:  5'- cGCGGUgAUCGCGGCGgcgcGCgCGACGg -3'
miRNA:   3'- cCGCCGgUGGCGCCGCaa--CG-GCUGCg -5'
15867 5' -62.2 NC_004065.1 + 175922 0.73 0.39235
Target:  5'- cGCGGCgaugACgGCGGCGUauauggcucuggcucUGCCGACGg -3'
miRNA:   3'- cCGCCGg---UGgCGCCGCA---------------ACGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 104895 0.73 0.39625
Target:  5'- cGCGGCUgggcgacGgCGCGGUGgUGCCGGCGg -3'
miRNA:   3'- cCGCCGG-------UgGCGCCGCaACGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 163383 0.73 0.397033
Target:  5'- gGGCGcCCACCGCGcCGaaGCCGACGa -3'
miRNA:   3'- -CCGCcGGUGGCGCcGCaaCGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 141587 0.73 0.397033
Target:  5'- aGGCGaccGCCACCaacgcgacgGCGGCGggcuccgcUGCCGGCGg -3'
miRNA:   3'- -CCGC---CGGUGG---------CGCCGCa-------ACGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 90367 0.73 0.397817
Target:  5'- aGCGGCCGCCGCacGCGccgcacagcuuggaGCCGGCGUu -3'
miRNA:   3'- cCGCCGGUGGCGc-CGCaa------------CGGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.