Results 61 - 80 of 386 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15867 | 5' | -62.2 | NC_004065.1 | + | 70480 | 0.72 | 0.404917 |
Target: 5'- cGGCGGCguucagggaCACCGUgaaGGCGaUGgCGGCGCc -3' miRNA: 3'- -CCGCCG---------GUGGCG---CCGCaACgGCUGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 35623 | 0.72 | 0.404917 |
Target: 5'- cGGCGGCgGCgGCGGCGgggaUGUcauCGGCGa -3' miRNA: 3'- -CCGCCGgUGgCGCCGCa---ACG---GCUGCg -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 70115 | 0.72 | 0.4129 |
Target: 5'- cGGCaGCgGCgGCGGCGgcGCCGAuCGa -3' miRNA: 3'- -CCGcCGgUGgCGCCGCaaCGGCU-GCg -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 143117 | 0.72 | 0.4129 |
Target: 5'- cGCGcGCCGCCGagGGCGagaCCGGCGCc -3' miRNA: 3'- cCGC-CGGUGGCg-CCGCaacGGCUGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 143276 | 0.72 | 0.420978 |
Target: 5'- gGGCGGCaGCUucaagggccgagGCGGCGUcggggGCCGGgGCa -3' miRNA: 3'- -CCGCCGgUGG------------CGCCGCAa----CGGCUgCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 109924 | 0.72 | 0.420978 |
Target: 5'- cGCGGCCGCCGUcGCGUcccgggaggucaUGagucgccucuCCGGCGCg -3' miRNA: 3'- cCGCCGGUGGCGcCGCA------------AC----------GGCUGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 56617 | 0.72 | 0.420978 |
Target: 5'- aGGCGGCCGCgGauGUGgaUGCgGugGCa -3' miRNA: 3'- -CCGCCGGUGgCgcCGCa-ACGgCugCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 159277 | 0.72 | 0.420978 |
Target: 5'- uGGUGGCCGCCgaGCGGaUGaUGCCGuucaGCg -3' miRNA: 3'- -CCGCCGGUGG--CGCC-GCaACGGCug--CG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 120559 | 0.72 | 0.42751 |
Target: 5'- cGGCGGUCGgCGCGaGCGggcgggaccuCCGGCGCc -3' miRNA: 3'- -CCGCCGGUgGCGC-CGCaac-------GGCUGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 138557 | 0.72 | 0.429152 |
Target: 5'- cGGCGGCgGaCUGaCGGCGacggUGCCGucCGCu -3' miRNA: 3'- -CCGCCGgU-GGC-GCCGCa---ACGGCu-GCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 61697 | 0.72 | 0.429152 |
Target: 5'- aGCGcGUCAcguCCGCGGCGUagcgGCgGAUGCg -3' miRNA: 3'- cCGC-CGGU---GGCGCCGCAa---CGgCUGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 151137 | 0.72 | 0.437418 |
Target: 5'- cGGCGGCaaCGCCGCgaugaucgucGGCGaccgcgaGCUGGCGCg -3' miRNA: 3'- -CCGCCG--GUGGCG----------CCGCaa-----CGGCUGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 34913 | 0.72 | 0.437418 |
Target: 5'- uGCGGCgaCACCGcCGGCa--GCUGACGCc -3' miRNA: 3'- cCGCCG--GUGGC-GCCGcaaCGGCUGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 141633 | 0.72 | 0.445775 |
Target: 5'- uGGCGGCUcggcgacggaggGCgGUGGCGgUGCCGcggcCGCg -3' miRNA: 3'- -CCGCCGG------------UGgCGCCGCaACGGCu---GCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 163252 | 0.72 | 0.445775 |
Target: 5'- cGuCGG-CGCaGCGGCGgcGCCGGCGCc -3' miRNA: 3'- cC-GCCgGUGgCGCCGCaaCGGCUGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 30522 | 0.72 | 0.445775 |
Target: 5'- uGGCGGCCGCCGCGuGggaagagacguaCGUgaucuucgGCUGcCGCa -3' miRNA: 3'- -CCGCCGGUGGCGC-C------------GCAa-------CGGCuGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 88976 | 0.72 | 0.445775 |
Target: 5'- uGGUGGCCACCuGgGGCGcc-UUGACGCc -3' miRNA: 3'- -CCGCCGGUGG-CgCCGCaacGGCUGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 159747 | 0.72 | 0.445775 |
Target: 5'- --aGGCCGCCGCGGgGUUGCgccaGuucuuuCGCa -3' miRNA: 3'- ccgCCGGUGGCGCCgCAACGg---Cu-----GCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 119590 | 0.72 | 0.449142 |
Target: 5'- cGGCuGGCCuggacgugcaggacGCCgGCGGCGgaggagacgccgucgGCCGugGCg -3' miRNA: 3'- -CCG-CCGG--------------UGG-CGCCGCaa-------------CGGCugCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 29976 | 0.72 | 0.452524 |
Target: 5'- uGGCGGCgGCgGCGGCGgcagugguaucGCCaGAgGCu -3' miRNA: 3'- -CCGCCGgUGgCGCCGCaa---------CGG-CUgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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