miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 155368 0.66 0.777586
Target:  5'- cGGCGGaCgCGCCGCGGUccggaccucagacccGgguaGCgGugGCg -3'
miRNA:   3'- -CCGCC-G-GUGGCGCCG---------------Caa--CGgCugCG- -5'
15867 5' -62.2 NC_004065.1 + 211836 0.66 0.774143
Target:  5'- cGGacaaGGCUAUCGCacgGGaGUcccgGCCGGCGCu -3'
miRNA:   3'- -CCg---CCGGUGGCG---CCgCAa---CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 117399 0.66 0.774143
Target:  5'- -uCGGCCGCgcgcgcugggcuCGCGGCGcggaguggcaGCCGAuCGCg -3'
miRNA:   3'- ccGCCGGUG------------GCGCCGCaa--------CGGCU-GCG- -5'
15867 5' -62.2 NC_004065.1 + 96578 0.66 0.774143
Target:  5'- aGGCGGaacaAUCGCaGaaCGagGCCGACGCg -3'
miRNA:   3'- -CCGCCgg--UGGCGcC--GCaaCGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 195660 0.66 0.774143
Target:  5'- cGGCaGCCGa-GCGGCGgagGgUGGCGUg -3'
miRNA:   3'- -CCGcCGGUggCGCCGCaa-CgGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 135064 0.66 0.774143
Target:  5'- cGCGGCaGCCGCGGagcggGCCc-CGCa -3'
miRNA:   3'- cCGCCGgUGGCGCCgcaa-CGGcuGCG- -5'
15867 5' -62.2 NC_004065.1 + 177485 0.66 0.774143
Target:  5'- cGGgGGCgCACgGCGGgGccGCCGGgGg -3'
miRNA:   3'- -CCgCCG-GUGgCGCCgCaaCGGCUgCg -5'
15867 5' -62.2 NC_004065.1 + 22910 0.66 0.774143
Target:  5'- cGCGGUCAgUgGCGGCG--GUCGGCGg -3'
miRNA:   3'- cCGCCGGU-GgCGCCGCaaCGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 41057 0.66 0.774143
Target:  5'- --gGGCCG-CGCGGCGacgaaGCCGAagaGCu -3'
miRNA:   3'- ccgCCGGUgGCGCCGCaa---CGGCUg--CG- -5'
15867 5' -62.2 NC_004065.1 + 132074 0.66 0.773279
Target:  5'- cGCGGuagguccCCACCGCuGCcacgccggUGCCGgACGCg -3'
miRNA:   3'- cCGCC-------GGUGGCGcCGca------ACGGC-UGCG- -5'
15867 5' -62.2 NC_004065.1 + 138152 0.66 0.765459
Target:  5'- aGCGGCCG--GCGGUGUUuacGCUgGugGCg -3'
miRNA:   3'- cCGCCGGUggCGCCGCAA---CGG-CugCG- -5'
15867 5' -62.2 NC_004065.1 + 119321 0.66 0.765459
Target:  5'- -uCGGCCGagUCGCGGCGgcgGCUcACGUc -3'
miRNA:   3'- ccGCCGGU--GGCGCCGCaa-CGGcUGCG- -5'
15867 5' -62.2 NC_004065.1 + 59776 0.66 0.765459
Target:  5'- cGGCGGCgGCCaCGGCcacgauaCCGGgGCa -3'
miRNA:   3'- -CCGCCGgUGGcGCCGcaac---GGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 46170 0.66 0.765459
Target:  5'- cGGCcacGGCCAaacaCGCgacGGCGUggggGCCGAacgacaaacacCGCg -3'
miRNA:   3'- -CCG---CCGGUg---GCG---CCGCAa---CGGCU-----------GCG- -5'
15867 5' -62.2 NC_004065.1 + 62038 0.66 0.765459
Target:  5'- cGCuGCUGCUGCuGGUGgUGCCGAaGCg -3'
miRNA:   3'- cCGcCGGUGGCG-CCGCaACGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 17953 0.66 0.765459
Target:  5'- cGCaGGUCGCCGgaCGGuCGUccgucUGCCG-CGCg -3'
miRNA:   3'- cCG-CCGGUGGC--GCC-GCA-----ACGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 139768 0.66 0.765459
Target:  5'- cGUGGUCACucugcucuCGCgGGCcUUcGCCGACGCc -3'
miRNA:   3'- cCGCCGGUG--------GCG-CCGcAA-CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 47389 0.66 0.765459
Target:  5'- cGCGGCCGCCGuCGGCa----CGAgaGCg -3'
miRNA:   3'- cCGCCGGUGGC-GCCGcaacgGCUg-CG- -5'
15867 5' -62.2 NC_004065.1 + 1021 0.66 0.765459
Target:  5'- aGCGuGCC-CCGCaGGCaGgcGCagCGACGCa -3'
miRNA:   3'- cCGC-CGGuGGCG-CCG-CaaCG--GCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 90957 0.66 0.765459
Target:  5'- cGGCGGUgaGCUucugGCuGGUGUaGCCGugGUa -3'
miRNA:   3'- -CCGCCGg-UGG----CG-CCGCAaCGGCugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.