miRNA display CGI


Results 41 - 60 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 119321 0.66 0.765459
Target:  5'- -uCGGCCGagUCGCGGCGgcgGCUcACGUc -3'
miRNA:   3'- ccGCCGGU--GGCGCCGCaa-CGGcUGCG- -5'
15867 5' -62.2 NC_004065.1 + 75072 0.66 0.764585
Target:  5'- aGGCGGCUgcucauGCCGCuccugagguagaGGCaggagacGUUGCgcgaGACGCg -3'
miRNA:   3'- -CCGCCGG------UGGCG------------CCG-------CAACGg---CUGCG- -5'
15867 5' -62.2 NC_004065.1 + 115992 0.66 0.763709
Target:  5'- aGGCGcucguccGCCgacgugcGCCGCGGgGgcagcucucUGCCGACGg -3'
miRNA:   3'- -CCGC-------CGG-------UGGCGCCgCa--------ACGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 175572 0.66 0.762833
Target:  5'- cGCGGCagACCGCGcGCGaacagcgagcgagagGCUGAgGCg -3'
miRNA:   3'- cCGCCGg-UGGCGC-CGCaa-------------CGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 229438 0.66 0.756673
Target:  5'- uGGUcuGCCACCacgggGUGGCGcUGCCGccagccccguuGCGCg -3'
miRNA:   3'- -CCGc-CGGUGG-----CGCCGCaACGGC-----------UGCG- -5'
15867 5' -62.2 NC_004065.1 + 127139 0.66 0.756673
Target:  5'- cGGCGGCgcUACCgGCGGCGg---CGAuCGCc -3'
miRNA:   3'- -CCGCCG--GUGG-CGCCGCaacgGCU-GCG- -5'
15867 5' -62.2 NC_004065.1 + 226127 0.66 0.756673
Target:  5'- cGGgGGUCGCCGCG-UGgagGCUGGCa- -3'
miRNA:   3'- -CCgCCGGUGGCGCcGCaa-CGGCUGcg -5'
15867 5' -62.2 NC_004065.1 + 42074 0.66 0.756673
Target:  5'- uGUGGCUgACCucgcugauGUGcGCGUcGCCGGCGCc -3'
miRNA:   3'- cCGCCGG-UGG--------CGC-CGCAaCGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 193740 0.66 0.756673
Target:  5'- aGGC-GCCAUCGCcucGGCucUGCCGAC-Cg -3'
miRNA:   3'- -CCGcCGGUGGCG---CCGcaACGGCUGcG- -5'
15867 5' -62.2 NC_004065.1 + 113438 0.66 0.756673
Target:  5'- aGCGGCgGCCGgGGgGcccGCCG-UGCc -3'
miRNA:   3'- cCGCCGgUGGCgCCgCaa-CGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 224278 0.66 0.756673
Target:  5'- uGCGGagCAgCGCuagcGCGUUGCCGAUcaGCa -3'
miRNA:   3'- cCGCCg-GUgGCGc---CGCAACGGCUG--CG- -5'
15867 5' -62.2 NC_004065.1 + 47297 0.66 0.756673
Target:  5'- cGGUGGCC-CCgGCGucgccCGUgagGCCGAucCGCg -3'
miRNA:   3'- -CCGCCGGuGG-CGCc----GCAa--CGGCU--GCG- -5'
15867 5' -62.2 NC_004065.1 + 126278 0.66 0.756673
Target:  5'- cGGaGGCC-CCGCcGCGcgaaCCGACGCc -3'
miRNA:   3'- -CCgCCGGuGGCGcCGCaac-GGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 153356 0.66 0.756673
Target:  5'- cGGCGG-CGCCGaCGcgaucCGUUucgaGCCGAUGCu -3'
miRNA:   3'- -CCGCCgGUGGC-GCc----GCAA----CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 114998 0.66 0.747795
Target:  5'- uGGCGGCCG-CGCGGaucUGCgaGAUGUc -3'
miRNA:   3'- -CCGCCGGUgGCGCCgcaACGg-CUGCG- -5'
15867 5' -62.2 NC_004065.1 + 120893 0.66 0.747795
Target:  5'- gGGCGGCguCuCGCGGCGacaGCaccCGCa -3'
miRNA:   3'- -CCGCCGguG-GCGCCGCaa-CGgcuGCG- -5'
15867 5' -62.2 NC_004065.1 + 109419 0.66 0.747795
Target:  5'- aGGUGGCUcuacaACCaGCcGCGcUGgCGGCGCg -3'
miRNA:   3'- -CCGCCGG-----UGG-CGcCGCaACgGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 55110 0.66 0.747795
Target:  5'- -cUGGCgC-CCGCGGCGgcGCCGAg-- -3'
miRNA:   3'- ccGCCG-GuGGCGCCGCaaCGGCUgcg -5'
15867 5' -62.2 NC_004065.1 + 187399 0.66 0.747795
Target:  5'- cGCGGCgCGgUGUGGCGUcgagGgCGAgCGCa -3'
miRNA:   3'- cCGCCG-GUgGCGCCGCAa---CgGCU-GCG- -5'
15867 5' -62.2 NC_004065.1 + 153257 0.66 0.747795
Target:  5'- cGGCGGCgaugCGCCGgacgaugacgaGGCc--GCCGGCGCc -3'
miRNA:   3'- -CCGCCG----GUGGCg----------CCGcaaCGGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.