miRNA display CGI


Results 61 - 80 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 32938 0.66 0.747795
Target:  5'- cGGuCGGCUcCCGCGcggauGCGggcGUCGACGUc -3'
miRNA:   3'- -CC-GCCGGuGGCGC-----CGCaa-CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 109419 0.66 0.747795
Target:  5'- aGGUGGCUcuacaACCaGCcGCGcUGgCGGCGCg -3'
miRNA:   3'- -CCGCCGG-----UGG-CGcCGCaACgGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 120893 0.66 0.747795
Target:  5'- gGGCGGCguCuCGCGGCGacaGCaccCGCa -3'
miRNA:   3'- -CCGCCGguG-GCGCCGCaa-CGgcuGCG- -5'
15867 5' -62.2 NC_004065.1 + 115041 0.66 0.747795
Target:  5'- cGCGGCCGCCaG-GGCcgaggGCaaCGGCGCg -3'
miRNA:   3'- cCGCCGGUGG-CgCCGcaa--CG--GCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 65659 0.66 0.747795
Target:  5'- cGCuGCCGCCGCaGGaagauCCGACGCc -3'
miRNA:   3'- cCGcCGGUGGCG-CCgcaacGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 114998 0.66 0.747795
Target:  5'- uGGCGGCCG-CGCGGaucUGCgaGAUGUc -3'
miRNA:   3'- -CCGCCGGUgGCGCCgcaACGg-CUGCG- -5'
15867 5' -62.2 NC_004065.1 + 38724 0.67 0.742425
Target:  5'- aGGCGGCagauaACCGCugcuuuuucaucuccGGCG-UGCCcGCGa -3'
miRNA:   3'- -CCGCCGg----UGGCG---------------CCGCaACGGcUGCg -5'
15867 5' -62.2 NC_004065.1 + 168695 0.67 0.738829
Target:  5'- --gGGUCGCCGCGGCucucGCCGuCGa -3'
miRNA:   3'- ccgCCGGUGGCGCCGcaa-CGGCuGCg -5'
15867 5' -62.2 NC_004065.1 + 152278 0.67 0.738829
Target:  5'- aGCaGGCaCACCGUggucguGGCGUUGCgcaGGCGg -3'
miRNA:   3'- cCG-CCG-GUGGCG------CCGCAACGg--CUGCg -5'
15867 5' -62.2 NC_004065.1 + 186549 0.67 0.738829
Target:  5'- cGGCGGCgccgaggacacgUGCUGCGGCGgaUGauGugGCu -3'
miRNA:   3'- -CCGCCG------------GUGGCGCCGCa-ACggCugCG- -5'
15867 5' -62.2 NC_004065.1 + 109835 0.67 0.738829
Target:  5'- cGGCagGGCgAgCGCGGCGUcGCUccccucacccagGugGCa -3'
miRNA:   3'- -CCG--CCGgUgGCGCCGCAaCGG------------CugCG- -5'
15867 5' -62.2 NC_004065.1 + 96051 0.67 0.738829
Target:  5'- gGGCcccGGCCGCCGauauaGGC-UUGcCCGucCGCg -3'
miRNA:   3'- -CCG---CCGGUGGCg----CCGcAAC-GGCu-GCG- -5'
15867 5' -62.2 NC_004065.1 + 24602 0.67 0.738829
Target:  5'- cGCcaccGCCGCCGcCGGUGUUGCgaaaGCGCc -3'
miRNA:   3'- cCGc---CGGUGGC-GCCGCAACGgc--UGCG- -5'
15867 5' -62.2 NC_004065.1 + 65329 0.67 0.738829
Target:  5'- cGGCGGCgGCgGCGGCagcaGCUG-CGg -3'
miRNA:   3'- -CCGCCGgUGgCGCCGcaa-CGGCuGCg -5'
15867 5' -62.2 NC_004065.1 + 195408 0.67 0.737928
Target:  5'- cGGCGaGCCGuacacguacgcucCCGCcGCGUcGCCGuCGUc -3'
miRNA:   3'- -CCGC-CGGU-------------GGCGcCGCAaCGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 94612 0.67 0.736124
Target:  5'- aGCGGUCcgauCgGCuccugacggggucgGGCGcgGCCGGCGCg -3'
miRNA:   3'- cCGCCGGu---GgCG--------------CCGCaaCGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 67558 0.67 0.729785
Target:  5'- uGGcCGGCCGCgCGaGGCcUUcGCCGaaGCGCa -3'
miRNA:   3'- -CC-GCCGGUG-GCgCCGcAA-CGGC--UGCG- -5'
15867 5' -62.2 NC_004065.1 + 146842 0.67 0.729785
Target:  5'- aGCgGGCCGCCGgGaGCGccuggucUGCauCGGCGCg -3'
miRNA:   3'- cCG-CCGGUGGCgC-CGCa------ACG--GCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 105002 0.67 0.729785
Target:  5'- gGGCGGCUgugugacgaGCCGCugcuGGCGUacgugagcgcgcUGCaCGAccCGCg -3'
miRNA:   3'- -CCGCCGG---------UGGCG----CCGCA------------ACG-GCU--GCG- -5'
15867 5' -62.2 NC_004065.1 + 59740 0.67 0.729785
Target:  5'- cGGCGGCgauggUGCCGaCcGCGUgGCCGAUGg -3'
miRNA:   3'- -CCGCCG-----GUGGC-GcCGCAaCGGCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.