miRNA display CGI


Results 81 - 100 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 114866 0.67 0.729785
Target:  5'- uGGCGacgacgguGCCGCCGgcCGGCGguuCCGAgGCc -3'
miRNA:   3'- -CCGC--------CGGUGGC--GCCGCaacGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 67558 0.67 0.729785
Target:  5'- uGGcCGGCCGCgCGaGGCcUUcGCCGaaGCGCa -3'
miRNA:   3'- -CC-GCCGGUG-GCgCCGcAA-CGGC--UGCG- -5'
15867 5' -62.2 NC_004065.1 + 223087 0.67 0.729785
Target:  5'- cGCaGCUuCCGaCGGCGgacGCCGAgGCc -3'
miRNA:   3'- cCGcCGGuGGC-GCCGCaa-CGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 194825 0.67 0.729785
Target:  5'- uGGCGGUgGCCGCcaCGUUcuccagGCCGACcacgGCg -3'
miRNA:   3'- -CCGCCGgUGGCGccGCAA------CGGCUG----CG- -5'
15867 5' -62.2 NC_004065.1 + 99141 0.67 0.729785
Target:  5'- uGCGGCCgACgGCGGUaaacaCCGugGCc -3'
miRNA:   3'- cCGCCGG-UGgCGCCGcaac-GGCugCG- -5'
15867 5' -62.2 NC_004065.1 + 98265 0.67 0.729785
Target:  5'- cGGCGGCC-CUG-GGCGcgcGCCu-CGCg -3'
miRNA:   3'- -CCGCCGGuGGCgCCGCaa-CGGcuGCG- -5'
15867 5' -62.2 NC_004065.1 + 88426 0.67 0.729785
Target:  5'- aGCGGagcCCGCCGCcgucGCGUUGgUGGCGg -3'
miRNA:   3'- cCGCC---GGUGGCGc---CGCAACgGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 112030 0.67 0.729785
Target:  5'- aGGa-GCCcgaACCGCGGCcgaaucgGCCGACGg -3'
miRNA:   3'- -CCgcCGG---UGGCGCCGcaa----CGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 128922 0.67 0.729785
Target:  5'- cGCGGU--UCGCGGCGUUcGCCaAgGCg -3'
miRNA:   3'- cCGCCGguGGCGCCGCAA-CGGcUgCG- -5'
15867 5' -62.2 NC_004065.1 + 127223 0.67 0.728876
Target:  5'- cGGCGGCCgcgaggaucgggcGCgGUGGCGggGaugaUGAgCGCg -3'
miRNA:   3'- -CCGCCGG-------------UGgCGCCGCaaCg---GCU-GCG- -5'
15867 5' -62.2 NC_004065.1 + 133027 0.67 0.727057
Target:  5'- aGCGGCagcagacgucgcagCAgCGCGaCGgacgGCCGGCGCa -3'
miRNA:   3'- cCGCCG--------------GUgGCGCcGCaa--CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 197478 0.67 0.720668
Target:  5'- cGGCGGaUACCGcCGGCGcgacgggGCCGucaucaggauggGCGCc -3'
miRNA:   3'- -CCGCCgGUGGC-GCCGCaa-----CGGC------------UGCG- -5'
15867 5' -62.2 NC_004065.1 + 176731 0.67 0.720668
Target:  5'- cGUGuGUUggACCGCGGUGUUGUggcgaaucagUGACGCg -3'
miRNA:   3'- cCGC-CGG--UGGCGCCGCAACG----------GCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 24128 0.67 0.720668
Target:  5'- cGGCGGCCcauCCGUcaagGGCGa---CGACGUc -3'
miRNA:   3'- -CCGCCGGu--GGCG----CCGCaacgGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 56542 0.67 0.720668
Target:  5'- uGGCGGCgaCACCGCaGGC---GCUGAUGa -3'
miRNA:   3'- -CCGCCG--GUGGCG-CCGcaaCGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 202404 0.67 0.720668
Target:  5'- gGGCGGaCGaaGCGgaGCGgaGCCGAgGCa -3'
miRNA:   3'- -CCGCCgGUggCGC--CGCaaCGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 101538 0.67 0.720668
Target:  5'- aGGCGGCagcaGCaGCGGCGcugGCaGugGUa -3'
miRNA:   3'- -CCGCCGg---UGgCGCCGCaa-CGgCugCG- -5'
15867 5' -62.2 NC_004065.1 + 229504 0.67 0.718837
Target:  5'- gGGCGcGCCACCGCGuaGUaGacucccagaaaaCGGCGUc -3'
miRNA:   3'- -CCGC-CGGUGGCGCcgCAaCg-----------GCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 48638 0.67 0.715167
Target:  5'- gGGCGcGaCCAgcgaCGUGGCGaagaugggaucgaGCCGACGCa -3'
miRNA:   3'- -CCGC-C-GGUg---GCGCCGCaa-----------CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 128155 0.67 0.711487
Target:  5'- cGGCGucGUCGuCUGCGGCGgcGauagcgcccCCGACGCc -3'
miRNA:   3'- -CCGC--CGGU-GGCGCCGCaaC---------GGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.