miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 1021 0.66 0.765459
Target:  5'- aGCGuGCC-CCGCaGGCaGgcGCagCGACGCa -3'
miRNA:   3'- cCGC-CGGuGGCG-CCG-CaaCG--GCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 1812 0.71 0.480061
Target:  5'- cGGCGGCgAUCGCGGUuc--CCGugGUg -3'
miRNA:   3'- -CCGCCGgUGGCGCCGcaacGGCugCG- -5'
15867 5' -62.2 NC_004065.1 + 4414 0.73 0.366502
Target:  5'- cGGUGGCCACgGCGG----GCCuGACGCu -3'
miRNA:   3'- -CCGCCGGUGgCGCCgcaaCGG-CUGCG- -5'
15867 5' -62.2 NC_004065.1 + 5979 0.7 0.552124
Target:  5'- cGCGGCCACCGCcgucauGGCccucggGCCuacGAUGCu -3'
miRNA:   3'- cCGCCGGUGGCG------CCGcaa---CGG---CUGCG- -5'
15867 5' -62.2 NC_004065.1 + 6913 0.68 0.640336
Target:  5'- cGGCGGCUucagcugcgggcacgGCCuCGGCGUccGCCGuCGg -3'
miRNA:   3'- -CCGCCGG---------------UGGcGCCGCAa-CGGCuGCg -5'
15867 5' -62.2 NC_004065.1 + 7329 0.66 0.791179
Target:  5'- cGGUGGUaccggaCGCGGCGgaGCCGuuCGg -3'
miRNA:   3'- -CCGCCGgug---GCGCCGCaaCGGCu-GCg -5'
15867 5' -62.2 NC_004065.1 + 17953 0.66 0.765459
Target:  5'- cGCaGGUCGCCGgaCGGuCGUccgucUGCCG-CGCg -3'
miRNA:   3'- cCG-CCGGUGGC--GCC-GCA-----ACGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 18076 0.66 0.782718
Target:  5'- uGGCGGCagcgacCGCCGCaGCcucGUgGCCGGCa- -3'
miRNA:   3'- -CCGCCG------GUGGCGcCG---CAaCGGCUGcg -5'
15867 5' -62.2 NC_004065.1 + 19997 0.69 0.617663
Target:  5'- cGUGuGCguCCGCGacuGCuGUUGCUGACGCu -3'
miRNA:   3'- cCGC-CGguGGCGC---CG-CAACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 21982 0.71 0.488834
Target:  5'- cGGUgagGGCCGCCaCGGCcacGCCGACGg -3'
miRNA:   3'- -CCG---CCGGUGGcGCCGcaaCGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 22067 0.66 0.782718
Target:  5'- cGGuCGGUCGCgGCGGCccaacCCGcGCGCu -3'
miRNA:   3'- -CC-GCCGGUGgCGCCGcaac-GGC-UGCG- -5'
15867 5' -62.2 NC_004065.1 + 22910 0.66 0.774143
Target:  5'- cGCGGUCAgUgGCGGCG--GUCGGCGg -3'
miRNA:   3'- cCGCCGGU-GgCGCCGCaaCGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 23635 0.68 0.66486
Target:  5'- gGGCGGCUgGCCuCGG----GCCGACGCa -3'
miRNA:   3'- -CCGCCGG-UGGcGCCgcaaCGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 24128 0.67 0.720668
Target:  5'- cGGCGGCCcauCCGUcaagGGCGa---CGACGUc -3'
miRNA:   3'- -CCGCCGGu--GGCG----CCGCaacgGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 24602 0.67 0.738829
Target:  5'- cGCcaccGCCGCCGcCGGUGUUGCgaaaGCGCc -3'
miRNA:   3'- cCGc---CGGUGGC-GCCGCAACGgc--UGCG- -5'
15867 5' -62.2 NC_004065.1 + 24759 0.7 0.561387
Target:  5'- gGGCGGCC-CCc---CGUUgGCCGGCGCg -3'
miRNA:   3'- -CCGCCGGuGGcgccGCAA-CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 24832 0.67 0.692959
Target:  5'- uGGUGGagaCGCaCGCGGCGc--CCGAUGUn -3'
miRNA:   3'- -CCGCCg--GUG-GCGCCGCaacGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 24860 0.68 0.66486
Target:  5'- uGGCGGCgACgGCGGCcucGaCgGugGCa -3'
miRNA:   3'- -CCGCCGgUGgCGCCGcaaC-GgCugCG- -5'
15867 5' -62.2 NC_004065.1 + 26041 0.69 0.598806
Target:  5'- aGCGGCuCGCaCGCGGCGUcgaaccgcgaGCCGAUu- -3'
miRNA:   3'- cCGCCG-GUG-GCGCCGCAa---------CGGCUGcg -5'
15867 5' -62.2 NC_004065.1 + 26359 0.67 0.702248
Target:  5'- cGGCgcuGGCgACgGCGGCGggGauaCGGgGCg -3'
miRNA:   3'- -CCG---CCGgUGgCGCCGCaaCg--GCUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.