miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 26954 0.69 0.598806
Target:  5'- -cCGGCgGCCGCGGCGggcuCCGGaGCu -3'
miRNA:   3'- ccGCCGgUGGCGCCGCaac-GGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 28471 0.73 0.381564
Target:  5'- aGCGGCgaGuuGUGGCGUcugGCCGACaGCg -3'
miRNA:   3'- cCGCCGg-UggCGCCGCAa--CGGCUG-CG- -5'
15867 5' -62.2 NC_004065.1 + 28715 0.66 0.780158
Target:  5'- gGGCGGagauCCuguccgaggaggagACCGCGGUG--GCgGACGCc -3'
miRNA:   3'- -CCGCC----GG--------------UGGCGCCGCaaCGgCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 28994 0.67 0.692959
Target:  5'- -cCGGCgGCgGUGGCGaggcGCCGcGCGCa -3'
miRNA:   3'- ccGCCGgUGgCGCCGCaa--CGGC-UGCG- -5'
15867 5' -62.2 NC_004065.1 + 29587 0.7 0.561387
Target:  5'- cGGCGGCCgcggugACCGCGGUccUGCagGAcuuCGCg -3'
miRNA:   3'- -CCGCCGG------UGGCGCCGcaACGg-CU---GCG- -5'
15867 5' -62.2 NC_004065.1 + 29976 0.72 0.452524
Target:  5'- uGGCGGCgGCgGCGGCGgcagugguaucGCCaGAgGCu -3'
miRNA:   3'- -CCGCCGgUGgCGCCGCaa---------CGG-CUgCG- -5'
15867 5' -62.2 NC_004065.1 + 30077 0.68 0.627109
Target:  5'- --gGGaCCGCCGUGGCGgaGCgCG-CGCu -3'
miRNA:   3'- ccgCC-GGUGGCGCCGCaaCG-GCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 30522 0.72 0.445775
Target:  5'- uGGCGGCCGCCGCGuGggaagagacguaCGUgaucuucgGCUGcCGCa -3'
miRNA:   3'- -CCGCCGGUGGCGC-C------------GCAa-------CGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 31022 0.68 0.646003
Target:  5'- aGCuuGCCcucgGCCGCGGCccUGCCGAgCGCc -3'
miRNA:   3'- cCGc-CGG----UGGCGCCGcaACGGCU-GCG- -5'
15867 5' -62.2 NC_004065.1 + 31084 0.71 0.471366
Target:  5'- uGGUGGCCACgGgCGGCGaucagaacGCCcggcGGCGCg -3'
miRNA:   3'- -CCGCCGGUGgC-GCCGCaa------CGG----CUGCG- -5'
15867 5' -62.2 NC_004065.1 + 31089 0.7 0.552124
Target:  5'- cGGCGGCCuugGCCGCcagGGUGgaGCgGGCagGCa -3'
miRNA:   3'- -CCGCCGG---UGGCG---CCGCaaCGgCUG--CG- -5'
15867 5' -62.2 NC_004065.1 + 31904 0.72 0.45422
Target:  5'- aGCgGGCCugaCGCGGCGcgucGCCGACaGCg -3'
miRNA:   3'- cCG-CCGGug-GCGCCGCaa--CGGCUG-CG- -5'
15867 5' -62.2 NC_004065.1 + 32319 0.7 0.552124
Target:  5'- cGGCGGCCG-CGaCGGCGU--CgGACGUc -3'
miRNA:   3'- -CCGCCGGUgGC-GCCGCAacGgCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 32938 0.66 0.747795
Target:  5'- cGGuCGGCUcCCGCGcggauGCGggcGUCGACGUc -3'
miRNA:   3'- -CC-GCCGGuGGCGC-----CGCaa-CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 33337 0.7 0.524634
Target:  5'- aGGCGGaUC-CCGuCGGgGUU-CCGACGCc -3'
miRNA:   3'- -CCGCC-GGuGGC-GCCgCAAcGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 33908 0.69 0.608227
Target:  5'- cGCGGaugccguacCCGCCGuUGGCGUggcgaGCCG-CGCg -3'
miRNA:   3'- cCGCC---------GGUGGC-GCCGCAa----CGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 34230 0.67 0.711487
Target:  5'- uGUGGUCucuCCGCGGCGcccagaGACGCg -3'
miRNA:   3'- cCGCCGGu--GGCGCCGCaacgg-CUGCG- -5'
15867 5' -62.2 NC_004065.1 + 34913 0.72 0.437418
Target:  5'- uGCGGCgaCACCGcCGGCa--GCUGACGCc -3'
miRNA:   3'- cCGCCG--GUGGC-GCCGcaaCGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 35127 0.7 0.524634
Target:  5'- cGGCGG-CGCCGUGGUcucGaUGCCGAaGCc -3'
miRNA:   3'- -CCGCCgGUGGCGCCG---CaACGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 35210 0.82 0.113131
Target:  5'- uGGCGGCCACCGCcacGGCGUUcagggGCuCGACGa -3'
miRNA:   3'- -CCGCCGGUGGCG---CCGCAA-----CG-GCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.