miRNA display CGI


Results 41 - 60 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 35572 0.73 0.369482
Target:  5'- aGGCGGCCACaggcggaaucgguggCGuCGGCGgUGUCGGUGCg -3'
miRNA:   3'- -CCGCCGGUG---------------GC-GCCGCaACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 35623 0.72 0.404917
Target:  5'- cGGCGGCgGCgGCGGCGgggaUGUcauCGGCGa -3'
miRNA:   3'- -CCGCCGgUGgCGCCGCa---ACG---GCUGCg -5'
15867 5' -62.2 NC_004065.1 + 36118 0.71 0.488834
Target:  5'- cGgGGCCGCUGcCGGCGgcgGuuGugGUg -3'
miRNA:   3'- cCgCCGGUGGC-GCCGCaa-CggCugCG- -5'
15867 5' -62.2 NC_004065.1 + 38169 0.67 0.702248
Target:  5'- gGGC-GCCAUCGCGGCGauaGUCG-CGg -3'
miRNA:   3'- -CCGcCGGUGGCGCCGCaa-CGGCuGCg -5'
15867 5' -62.2 NC_004065.1 + 38724 0.67 0.742425
Target:  5'- aGGCGGCagauaACCGCugcuuuuucaucuccGGCG-UGCCcGCGa -3'
miRNA:   3'- -CCGCCGg----UGGCG---------------CCGCaACGGcUGCg -5'
15867 5' -62.2 NC_004065.1 + 39269 0.67 0.710565
Target:  5'- aGGCcGCCACCGUccccaucagaaccGGCGaauggggaGCCGGCGa -3'
miRNA:   3'- -CCGcCGGUGGCG-------------CCGCaa------CGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 40112 0.69 0.596925
Target:  5'- uGGCGGCCGCUauauuggugGUGGCGaucuccgcgcucgUgagacgcUGCCGACGg -3'
miRNA:   3'- -CCGCCGGUGG---------CGCCGC-------------A-------ACGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 41057 0.66 0.774143
Target:  5'- --gGGCCG-CGCGGCGacgaaGCCGAagaGCu -3'
miRNA:   3'- ccgCCGGUgGCGCCGCaa---CGGCUg--CG- -5'
15867 5' -62.2 NC_004065.1 + 41743 0.69 0.616719
Target:  5'- cGGCgGGCCGaugaacuUCGUGGUGcUGaCGACGCa -3'
miRNA:   3'- -CCG-CCGGU-------GGCGCCGCaACgGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 42074 0.66 0.756673
Target:  5'- uGUGGCUgACCucgcugauGUGcGCGUcGCCGGCGCc -3'
miRNA:   3'- cCGCCGG-UGG--------CGC-CGCAaCGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 44520 0.7 0.53283
Target:  5'- cGGCGGCgcgauguUACCGgGGaCGgUGgCGGCGCu -3'
miRNA:   3'- -CCGCCG-------GUGGCgCC-GCaACgGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 45521 0.68 0.663919
Target:  5'- cGGaCGGUCuacgccacccggcGCCGCGGCGgcGgCGGCaGCc -3'
miRNA:   3'- -CC-GCCGG-------------UGGCGCCGCaaCgGCUG-CG- -5'
15867 5' -62.2 NC_004065.1 + 45997 0.69 0.617663
Target:  5'- gGGC-GCCGUgGCGGCGUugaacucgggucUGCCGAUGg -3'
miRNA:   3'- -CCGcCGGUGgCGCCGCA------------ACGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 46170 0.66 0.765459
Target:  5'- cGGCcacGGCCAaacaCGCgacGGCGUggggGCCGAacgacaaacacCGCg -3'
miRNA:   3'- -CCG---CCGGUg---GCG---CCGCAa---CGGCU-----------GCG- -5'
15867 5' -62.2 NC_004065.1 + 47297 0.66 0.756673
Target:  5'- cGGUGGCC-CCgGCGucgccCGUgagGCCGAucCGCg -3'
miRNA:   3'- -CCGCCGGuGG-CGCc----GCAa--CGGCU--GCG- -5'
15867 5' -62.2 NC_004065.1 + 47389 0.66 0.765459
Target:  5'- cGCGGCCGCCGuCGGCa----CGAgaGCg -3'
miRNA:   3'- cCGCCGGUGGC-GCCGcaacgGCUg-CG- -5'
15867 5' -62.2 NC_004065.1 + 48113 0.8 0.139395
Target:  5'- cGGUGGCgGCgGCGGUgggaccucgcgcacGUUGCCGACGUg -3'
miRNA:   3'- -CCGCCGgUGgCGCCG--------------CAACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 48638 0.67 0.715167
Target:  5'- gGGCGcGaCCAgcgaCGUGGCGaagaugggaucgaGCCGACGCa -3'
miRNA:   3'- -CCGC-C-GGUg---GCGCCGCaa-----------CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 49655 0.71 0.480061
Target:  5'- cGGUGGaCCAguuucCCGUGGCGgUGCCGcCGg -3'
miRNA:   3'- -CCGCC-GGU-----GGCGCCGCaACGGCuGCg -5'
15867 5' -62.2 NC_004065.1 + 50342 0.68 0.683627
Target:  5'- cGUGGCCACCGCcGCGaucCCGA-GCc -3'
miRNA:   3'- cCGCCGGUGGCGcCGCaacGGCUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.