miRNA display CGI


Results 61 - 80 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 51014 0.67 0.702248
Target:  5'- gGGaGGagaCGCCGCGGCGagaUCGAUGCa -3'
miRNA:   3'- -CCgCCg--GUGGCGCCGCaacGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 52542 0.74 0.323824
Target:  5'- cGGCGGCCccGCCGUGcGCccccGCCGAgCGCa -3'
miRNA:   3'- -CCGCCGG--UGGCGC-CGcaa-CGGCU-GCG- -5'
15867 5' -62.2 NC_004065.1 + 52658 0.77 0.233705
Target:  5'- -uUGGCCGCCGCuGGCGgugGCgGugGCg -3'
miRNA:   3'- ccGCCGGUGGCG-CCGCaa-CGgCugCG- -5'
15867 5' -62.2 NC_004065.1 + 55110 0.66 0.747795
Target:  5'- -cUGGCgC-CCGCGGCGgcGCCGAg-- -3'
miRNA:   3'- ccGCCG-GuGGCGCCGCaaCGGCUgcg -5'
15867 5' -62.2 NC_004065.1 + 55775 0.67 0.711487
Target:  5'- uGGCGGUCucggcGCCGagcaGGCGaucgcgGCUGACGa -3'
miRNA:   3'- -CCGCCGG-----UGGCg---CCGCaa----CGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 56143 0.71 0.480061
Target:  5'- cGGCGGCgGCCcacacacaCGGCGUga-CGGCGCc -3'
miRNA:   3'- -CCGCCGgUGGc-------GCCGCAacgGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 56542 0.67 0.720668
Target:  5'- uGGCGGCgaCACCGCaGGC---GCUGAUGa -3'
miRNA:   3'- -CCGCCG--GUGGCG-CCGcaaCGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 56617 0.72 0.420978
Target:  5'- aGGCGGCCGCgGauGUGgaUGCgGugGCa -3'
miRNA:   3'- -CCGCCGGUGgCgcCGCa-ACGgCugCG- -5'
15867 5' -62.2 NC_004065.1 + 58603 0.68 0.644114
Target:  5'- cGGCGGagucgagaucgaCGCgCGCGGCGgagucGCCGGucuCGCg -3'
miRNA:   3'- -CCGCCg-----------GUG-GCGCCGCaa---CGGCU---GCG- -5'
15867 5' -62.2 NC_004065.1 + 59708 0.68 0.655439
Target:  5'- gGGCGccgaGCgGCCGCGGCGcacggcGaCCGuCGCg -3'
miRNA:   3'- -CCGC----CGgUGGCGCCGCaa----C-GGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 59740 0.67 0.729785
Target:  5'- cGGCGGCgauggUGCCGaCcGCGUgGCCGAUGg -3'
miRNA:   3'- -CCGCCG-----GUGGC-GcCGCAaCGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 59776 0.66 0.765459
Target:  5'- cGGCGGCgGCCaCGGCcacgauaCCGGgGCa -3'
miRNA:   3'- -CCGCCGgUGGcGCCGcaac---GGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 61253 0.7 0.533743
Target:  5'- aGGCgucgaaGGCCugCGCGGCGU---CGACGg -3'
miRNA:   3'- -CCG------CCGGugGCGCCGCAacgGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 61697 0.72 0.429152
Target:  5'- aGCGcGUCAcguCCGCGGCGUagcgGCgGAUGCg -3'
miRNA:   3'- cCGC-CGGU---GGCGCCGCAa---CGgCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 62038 0.66 0.765459
Target:  5'- cGCuGCUGCUGCuGGUGgUGCCGAaGCg -3'
miRNA:   3'- cCGcCGGUGGCG-CCGCaACGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 62370 0.7 0.533743
Target:  5'- cGGCGGUgGCgGCGGgGguggUGgCGGCGg -3'
miRNA:   3'- -CCGCCGgUGgCGCCgCa---ACgGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 62485 0.68 0.683627
Target:  5'- aGCGGCCGCgGCGguaGCGUUGgucuUCGGCa- -3'
miRNA:   3'- cCGCCGGUGgCGC---CGCAAC----GGCUGcg -5'
15867 5' -62.2 NC_004065.1 + 62619 0.7 0.561387
Target:  5'- cGGCGGCagcaGCCGCGGCagcaGCauuGACaGCa -3'
miRNA:   3'- -CCGCCGg---UGGCGCCGcaa-CGg--CUG-CG- -5'
15867 5' -62.2 NC_004065.1 + 62658 0.68 0.674258
Target:  5'- uGGCGGCgGagacggcaGCGGCGacccugucUGCCGcCGCg -3'
miRNA:   3'- -CCGCCGgUgg------CGCCGCa-------ACGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 63528 0.69 0.597865
Target:  5'- cGCGGCCguagaucGCCGCGaGCGUguucuuggUGgCGGCGg -3'
miRNA:   3'- cCGCCGG-------UGGCGC-CGCA--------ACgGCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.