miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 229504 0.67 0.718837
Target:  5'- gGGCGcGCCACCGCGuaGUaGacucccagaaaaCGGCGUc -3'
miRNA:   3'- -CCGC-CGGUGGCGCcgCAaCg-----------GCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 229438 0.66 0.756673
Target:  5'- uGGUcuGCCACCacgggGUGGCGcUGCCGccagccccguuGCGCg -3'
miRNA:   3'- -CCGc-CGGUGG-----CGCCGCaACGGC-----------UGCG- -5'
15867 5' -62.2 NC_004065.1 + 229347 0.68 0.687364
Target:  5'- gGGCGGUCGCUcgaccaGCGaGCGggUGCUcgcuacgcgcggccgGACGCa -3'
miRNA:   3'- -CCGCCGGUGG------CGC-CGCa-ACGG---------------CUGCG- -5'
15867 5' -62.2 NC_004065.1 + 226127 0.66 0.756673
Target:  5'- cGGgGGUCGCCGCG-UGgagGCUGGCa- -3'
miRNA:   3'- -CCgCCGGUGGCGCcGCaa-CGGCUGcg -5'
15867 5' -62.2 NC_004065.1 + 225625 0.69 0.62144
Target:  5'- cGUGGCCACCGCuccgaacagcacuccGGCucccGCCGcCGCc -3'
miRNA:   3'- cCGCCGGUGGCG---------------CCGcaa-CGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 225376 0.7 0.561387
Target:  5'- uGGaCGcCCGCgGCGGgGgcGCUGGCGCu -3'
miRNA:   3'- -CC-GCcGGUGgCGCCgCaaCGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 224388 0.71 0.471366
Target:  5'- uGGCGGCguuCCGuCGGCGUcaCCGugGUa -3'
miRNA:   3'- -CCGCCGgu-GGC-GCCGCAacGGCugCG- -5'
15867 5' -62.2 NC_004065.1 + 224278 0.66 0.756673
Target:  5'- uGCGGagCAgCGCuagcGCGUUGCCGAUcaGCa -3'
miRNA:   3'- cCGCCg-GUgGCGc---CGCAACGGCUG--CG- -5'
15867 5' -62.2 NC_004065.1 + 223771 0.68 0.655439
Target:  5'- uGCGGaCgGCCGCGaGCugcUUGCCGuauCGCu -3'
miRNA:   3'- cCGCC-GgUGGCGC-CGc--AACGGCu--GCG- -5'
15867 5' -62.2 NC_004065.1 + 223087 0.67 0.729785
Target:  5'- cGCaGCUuCCGaCGGCGgacGCCGAgGCc -3'
miRNA:   3'- cCGcCGGuGGC-GCCGCaa-CGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 221762 0.66 0.747795
Target:  5'- uGCGGUUGCgGCGacgguaucgucuGCGUUGUCGGgGCc -3'
miRNA:   3'- cCGCCGGUGgCGC------------CGCAACGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 217641 0.66 0.790339
Target:  5'- cGCGGCUAUCGUGcCGUuaucuacuguucgUGUCGAUGUu -3'
miRNA:   3'- cCGCCGGUGGCGCcGCA-------------ACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 213485 0.71 0.480061
Target:  5'- aGCGGUCGCCGCGaCc--GUCGACGCc -3'
miRNA:   3'- cCGCCGGUGGCGCcGcaaCGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 213137 0.68 0.66486
Target:  5'- cGUGGUCACCGUaguGGCGUugggGCUGGaGCu -3'
miRNA:   3'- cCGCCGGUGGCG---CCGCAa---CGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 212719 0.66 0.747795
Target:  5'- aGGCGGCU-CCGaGGcCGUUGucuCCGcCGCa -3'
miRNA:   3'- -CCGCCGGuGGCgCC-GCAAC---GGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 211941 0.68 0.66486
Target:  5'- -cCGGCCacgagGCUGCGGCGgucGCUGcCGCc -3'
miRNA:   3'- ccGCCGG-----UGGCGCCGCaa-CGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 211836 0.66 0.774143
Target:  5'- cGGacaaGGCUAUCGCacgGGaGUcccgGCCGGCGCu -3'
miRNA:   3'- -CCg---CCGGUGGCG---CCgCAa---CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 210702 0.66 0.791179
Target:  5'- cGGCGGagACC-CGaGCGUU-UCGACGCc -3'
miRNA:   3'- -CCGCCggUGGcGC-CGCAAcGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 208026 0.83 0.093132
Target:  5'- cGGCGGCgaugACCGuCGGCGUgGCCGugGCg -3'
miRNA:   3'- -CCGCCGg---UGGC-GCCGCAaCGGCugCG- -5'
15867 5' -62.2 NC_004065.1 + 207992 0.69 0.617663
Target:  5'- cGCGGCCugCcCGGg---GCCGugGCc -3'
miRNA:   3'- cCGCCGGugGcGCCgcaaCGGCugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.