miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 205908 0.68 0.636557
Target:  5'- cGGaugGGCCGCCGaGGCcgacGUCGGCGCc -3'
miRNA:   3'- -CCg--CCGGUGGCgCCGcaa-CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 205507 0.7 0.542908
Target:  5'- cGCuGCCGCCGCcaucuUGggGCCGGCGCu -3'
miRNA:   3'- cCGcCGGUGGCGcc---GCaaCGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 205432 0.71 0.462751
Target:  5'- cGGCGGCgGCgGUGGCGgcGaCGAcaCGCg -3'
miRNA:   3'- -CCGCCGgUGgCGCCGCaaCgGCU--GCG- -5'
15867 5' -62.2 NC_004065.1 + 204534 0.69 0.567896
Target:  5'- cGUGGUCGCCagacgccucgucggGCGGCGggaggUGCUG-CGCg -3'
miRNA:   3'- cCGCCGGUGG--------------CGCCGCa----ACGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 203998 0.66 0.791179
Target:  5'- uGCGaGCCGCUgGUGGaCGacGCCGAgGCc -3'
miRNA:   3'- cCGC-CGGUGG-CGCC-GCaaCGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 203613 0.7 0.552124
Target:  5'- aGGCcgccGCCGCCGUGGCGgaguuggagGCgGGgGCa -3'
miRNA:   3'- -CCGc---CGGUGGCGCCGCaa-------CGgCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 203064 0.68 0.683627
Target:  5'- uGGCGaGCUccggagcccGCCGCGGCc--GCCGGaGCg -3'
miRNA:   3'- -CCGC-CGG---------UGGCGCCGcaaCGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 202404 0.67 0.720668
Target:  5'- gGGCGGaCGaaGCGgaGCGgaGCCGAgGCa -3'
miRNA:   3'- -CCGCCgGUggCGC--CGCaaCGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 200792 0.7 0.561387
Target:  5'- cGGUGGCgGgCGaCGGCGUc-UCGGCGCg -3'
miRNA:   3'- -CCGCCGgUgGC-GCCGCAacGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 200444 0.77 0.217934
Target:  5'- cGCGGUCACCGCGGCc--GCCGucagauagcgggaGCGCg -3'
miRNA:   3'- cCGCCGGUGGCGCCGcaaCGGC-------------UGCG- -5'
15867 5' -62.2 NC_004065.1 + 200013 0.7 0.542908
Target:  5'- -aCGGgCACCGCGGuCGUcaggggcaggUGCCGuucCGCg -3'
miRNA:   3'- ccGCCgGUGGCGCC-GCA----------ACGGCu--GCG- -5'
15867 5' -62.2 NC_004065.1 + 199517 0.76 0.249871
Target:  5'- cGGCGGCCGCCacGUGcGCGcaGCCgGGCGCc -3'
miRNA:   3'- -CCGCCGGUGG--CGC-CGCaaCGG-CUGCG- -5'
15867 5' -62.2 NC_004065.1 + 199447 0.68 0.683627
Target:  5'- aGGCGcUCGCCGCGGCGgaacggggGCUGGuaUGUa -3'
miRNA:   3'- -CCGCcGGUGGCGCCGCaa------CGGCU--GCG- -5'
15867 5' -62.2 NC_004065.1 + 198943 0.7 0.512882
Target:  5'- uGGCGGCCaagGCCGCcgccaugaggaaGGCGUacGCCGucaacagacuccugGCGCu -3'
miRNA:   3'- -CCGCCGG---UGGCG------------CCGCAa-CGGC--------------UGCG- -5'
15867 5' -62.2 NC_004065.1 + 198925 0.7 0.524634
Target:  5'- cGCGcGCCGCCG-GGCGUUcugaucgccGCCcGugGCc -3'
miRNA:   3'- cCGC-CGGUGGCgCCGCAA---------CGG-CugCG- -5'
15867 5' -62.2 NC_004065.1 + 198865 0.71 0.506599
Target:  5'- uGCuaGCUccgGCCGCGGCGgUGUCGAUGCc -3'
miRNA:   3'- cCGc-CGG---UGGCGCCGCaACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 198642 0.69 0.598806
Target:  5'- uGCGcGCCACCagguGCaGCGUgucGuCCGACGCc -3'
miRNA:   3'- cCGC-CGGUGG----CGcCGCAa--C-GGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 198507 0.66 0.782718
Target:  5'- gGGUaGCC-CCGCGGCacGUcGCaCGAgGCg -3'
miRNA:   3'- -CCGcCGGuGGCGCCG--CAaCG-GCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 198033 0.78 0.198025
Target:  5'- cGCGGUCGCCgGCGGUuccaaggggauggaGUUGCgGACGCa -3'
miRNA:   3'- cCGCCGGUGG-CGCCG--------------CAACGgCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 197720 0.74 0.351855
Target:  5'- cGCGGCCGCCGUgagcuucaccuuGGCGaucGCCGACu- -3'
miRNA:   3'- cCGCCGGUGGCG------------CCGCaa-CGGCUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.