miRNA display CGI


Results 41 - 60 of 386 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 197478 0.67 0.720668
Target:  5'- cGGCGGaUACCGcCGGCGcgacgggGCCGucaucaggauggGCGCc -3'
miRNA:   3'- -CCGCCgGUGGC-GCCGCaa-----CGGC------------UGCG- -5'
15867 5' -62.2 NC_004065.1 + 196825 0.71 0.506599
Target:  5'- cGUGGUCACCuGCGGCaggUGCgGGCGa -3'
miRNA:   3'- cCGCCGGUGG-CGCCGca-ACGgCUGCg -5'
15867 5' -62.2 NC_004065.1 + 195660 0.66 0.774143
Target:  5'- cGGCaGCCGa-GCGGCGgagGgUGGCGUg -3'
miRNA:   3'- -CCGcCGGUggCGCCGCaa-CgGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 195408 0.67 0.737928
Target:  5'- cGGCGaGCCGuacacguacgcucCCGCcGCGUcGCCGuCGUc -3'
miRNA:   3'- -CCGC-CGGU-------------GGCGcCGCAaCGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 195108 0.66 0.791179
Target:  5'- gGGCGucaGCuCGCCgGCGGUGUcGCCG-CaGCa -3'
miRNA:   3'- -CCGC---CG-GUGG-CGCCGCAaCGGCuG-CG- -5'
15867 5' -62.2 NC_004065.1 + 194825 0.67 0.729785
Target:  5'- uGGCGGUgGCCGCcaCGUUcuccagGCCGACcacgGCg -3'
miRNA:   3'- -CCGCCGgUGGCGccGCAA------CGGCUG----CG- -5'
15867 5' -62.2 NC_004065.1 + 194457 0.7 0.552124
Target:  5'- aGCGGUugggCACgGCGGCGccGCCGcucACGCc -3'
miRNA:   3'- cCGCCG----GUGgCGCCGCaaCGGC---UGCG- -5'
15867 5' -62.2 NC_004065.1 + 194417 0.68 0.683627
Target:  5'- cGCcGCCGCCGUGGaucccgcacCGacaccGCCGACGCc -3'
miRNA:   3'- cCGcCGGUGGCGCC---------GCaa---CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 193740 0.66 0.756673
Target:  5'- aGGC-GCCAUCGCcucGGCucUGCCGAC-Cg -3'
miRNA:   3'- -CCGcCGGUGGCG---CCGcaACGGCUGcG- -5'
15867 5' -62.2 NC_004065.1 + 192838 0.69 0.589406
Target:  5'- aGGCaGCCGCUcucggugacgGCGGCGgagUUGCUGACa- -3'
miRNA:   3'- -CCGcCGGUGG----------CGCCGC---AACGGCUGcg -5'
15867 5' -62.2 NC_004065.1 + 192141 0.69 0.608227
Target:  5'- -aCGGCCGCCaGaCGGCcuuccgcGCUGACGCg -3'
miRNA:   3'- ccGCCGGUGG-C-GCCGcaa----CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 191554 0.7 0.552124
Target:  5'- gGGCGGCUcacucuuccGCaCGCGuGCGgUGaUCGGCGCg -3'
miRNA:   3'- -CCGCCGG---------UG-GCGC-CGCaAC-GGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 187399 0.66 0.747795
Target:  5'- cGCGGCgCGgUGUGGCGUcgagGgCGAgCGCa -3'
miRNA:   3'- cCGCCG-GUgGCGCCGCAa---CgGCU-GCG- -5'
15867 5' -62.2 NC_004065.1 + 187293 0.71 0.484438
Target:  5'- aGCGGCCGCCGCgcugcgaucacuggGGCGgaggagcgcucGCCGACcucuGCa -3'
miRNA:   3'- cCGCCGGUGGCG--------------CCGCaa---------CGGCUG----CG- -5'
15867 5' -62.2 NC_004065.1 + 187029 0.71 0.497681
Target:  5'- uGGCGGCgG-CGCGGCGUcugaGgUGAUGCg -3'
miRNA:   3'- -CCGCCGgUgGCGCCGCAa---CgGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 186905 0.7 0.524634
Target:  5'- cGGCGGUCuuCGCGaGCGcgGaUCGGCGCc -3'
miRNA:   3'- -CCGCCGGugGCGC-CGCaaC-GGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 186549 0.67 0.738829
Target:  5'- cGGCGGCgccgaggacacgUGCUGCGGCGgaUGauGugGCu -3'
miRNA:   3'- -CCGCCG------------GUGGCGCCGCa-ACggCugCG- -5'
15867 5' -62.2 NC_004065.1 + 184828 0.7 0.533743
Target:  5'- uGGCGGCaGCgGCGGCGUguUGCCccUGUc -3'
miRNA:   3'- -CCGCCGgUGgCGCCGCA--ACGGcuGCG- -5'
15867 5' -62.2 NC_004065.1 + 184483 0.75 0.278851
Target:  5'- gGGCGGCUgccgccgccGCCGCGGCGccgGgUGGCGUa -3'
miRNA:   3'- -CCGCCGG---------UGGCGCCGCaa-CgGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 184178 0.69 0.617663
Target:  5'- aGCGGCCAUCGCGuccCGUgcgGCCGGucCGa -3'
miRNA:   3'- cCGCCGGUGGCGCc--GCAa--CGGCU--GCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.