miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 123546 0.73 0.378519
Target:  5'- gGGUGGCCAgCGCcGCGUccucgucguacggGUCGACGCc -3'
miRNA:   3'- -CCGCCGGUgGCGcCGCAa------------CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 199517 0.76 0.249871
Target:  5'- cGGCGGCCGCCacGUGcGCGcaGCCgGGCGCc -3'
miRNA:   3'- -CCGCCGGUGG--CGC-CGCaaCGG-CUGCG- -5'
15867 5' -62.2 NC_004065.1 + 52542 0.74 0.323824
Target:  5'- cGGCGGCCccGCCGUGcGCccccGCCGAgCGCa -3'
miRNA:   3'- -CCGCCGG--UGGCGC-CGcaa-CGGCU-GCG- -5'
15867 5' -62.2 NC_004065.1 + 128413 0.74 0.343978
Target:  5'- aGCGGCaGCgGCGGCGgcGCCGccaccgagucugaGCGCg -3'
miRNA:   3'- cCGCCGgUGgCGCCGCaaCGGC-------------UGCG- -5'
15867 5' -62.2 NC_004065.1 + 103319 0.74 0.351855
Target:  5'- aGCGGUCGCCGCaGGCGUagGUCGAaGUa -3'
miRNA:   3'- cCGCCGGUGGCG-CCGCAa-CGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 197720 0.74 0.351855
Target:  5'- cGCGGCCGCCGUgagcuucaccuuGGCGaucGCCGACu- -3'
miRNA:   3'- cCGCCGGUGGCG------------CCGCaa-CGGCUGcg -5'
15867 5' -62.2 NC_004065.1 + 172265 0.73 0.359126
Target:  5'- aGGCGGCCACC-UGGCGcucgUGCCGuuACa- -3'
miRNA:   3'- -CCGCCGGUGGcGCCGCa---ACGGC--UGcg -5'
15867 5' -62.2 NC_004065.1 + 78670 0.73 0.359126
Target:  5'- aGCGGCCggcGCCGCGGCGc--CCGAgaGCg -3'
miRNA:   3'- cCGCCGG---UGGCGCCGCaacGGCUg-CG- -5'
15867 5' -62.2 NC_004065.1 + 35572 0.73 0.369482
Target:  5'- aGGCGGCCACaggcggaaucgguggCGuCGGCGgUGUCGGUGCg -3'
miRNA:   3'- -CCGCCGGUG---------------GC-GCCGCaACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 105928 0.76 0.249871
Target:  5'- aGCaacGCCACCGCGuGCGgggggUGCuCGACGCa -3'
miRNA:   3'- cCGc--CGGUGGCGC-CGCa----ACG-GCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 52658 0.77 0.233705
Target:  5'- -uUGGCCGCCGCuGGCGgugGCgGugGCg -3'
miRNA:   3'- ccGCCGGUGGCG-CCGCaa-CGgCugCG- -5'
15867 5' -62.2 NC_004065.1 + 114330 0.77 0.223423
Target:  5'- uGGCGGCCGCCGCGaaacagaacGcCGUacCCGGCGCu -3'
miRNA:   3'- -CCGCCGGUGGCGC---------C-GCAacGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 48113 0.8 0.139395
Target:  5'- cGGUGGCgGCgGCGGUgggaccucgcgcacGUUGCCGACGUg -3'
miRNA:   3'- -CCGCCGgUGgCGCCG--------------CAACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 154164 0.8 0.147221
Target:  5'- cGGCGGCgGCgGCGGCuGUUGCUGGCu- -3'
miRNA:   3'- -CCGCCGgUGgCGCCG-CAACGGCUGcg -5'
15867 5' -62.2 NC_004065.1 + 109573 0.8 0.15435
Target:  5'- aGGUGGCCGCCugucuccugGCGGCGUaucagGCCG-CGCu -3'
miRNA:   3'- -CCGCCGGUGG---------CGCCGCAa----CGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 118187 0.79 0.16179
Target:  5'- cGGCuGCCGCCGUucgguuGGCGcgGCUGACGCa -3'
miRNA:   3'- -CCGcCGGUGGCG------CCGCaaCGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 66633 0.78 0.190428
Target:  5'- uGCGGCgCugCGUGGCGgacgcGCUGACGCu -3'
miRNA:   3'- cCGCCG-GugGCGCCGCaa---CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 130087 0.78 0.194866
Target:  5'- aGCcGCCGCCGCGGCGgu-CCGGCGUc -3'
miRNA:   3'- cCGcCGGUGGCGCCGCaacGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 99539 0.77 0.213528
Target:  5'- uGGuCGGCgcucccgucuCGCCGCGGCGgacgGCCGugGUg -3'
miRNA:   3'- -CC-GCCG----------GUGGCGCCGCaa--CGGCugCG- -5'
15867 5' -62.2 NC_004065.1 + 200444 0.77 0.217934
Target:  5'- cGCGGUCACCGCGGCc--GCCGucagauagcgggaGCGCg -3'
miRNA:   3'- cCGCCGGUGGCGCCGcaaCGGC-------------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.