miRNA display CGI


Results 61 - 80 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 35572 0.73 0.369482
Target:  5'- aGGCGGCCACaggcggaaucgguggCGuCGGCGgUGUCGGUGCg -3'
miRNA:   3'- -CCGCCGGUG---------------GC-GCCGCaACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 123546 0.73 0.378519
Target:  5'- gGGUGGCCAgCGCcGCGUccucgucguacggGUCGACGCc -3'
miRNA:   3'- -CCGCCGGUgGCGcCGCAa------------CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 109924 0.72 0.420978
Target:  5'- cGCGGCCGCCGUcGCGUcccgggaggucaUGagucgccucuCCGGCGCg -3'
miRNA:   3'- cCGCCGGUGGCGcCGCA------------AC----------GGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 120559 0.72 0.42751
Target:  5'- cGGCGGUCGgCGCGaGCGggcgggaccuCCGGCGCc -3'
miRNA:   3'- -CCGCCGGUgGCGC-CGCaac-------GGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 61697 0.72 0.429152
Target:  5'- aGCGcGUCAcguCCGCGGCGUagcgGCgGAUGCg -3'
miRNA:   3'- cCGC-CGGU---GGCGCCGCAa---CGgCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 138557 0.72 0.429152
Target:  5'- cGGCGGCgGaCUGaCGGCGacggUGCCGucCGCu -3'
miRNA:   3'- -CCGCCGgU-GGC-GCCGCa---ACGGCu-GCG- -5'
15867 5' -62.2 NC_004065.1 + 151137 0.72 0.437418
Target:  5'- cGGCGGCaaCGCCGCgaugaucgucGGCGaccgcgaGCUGGCGCg -3'
miRNA:   3'- -CCGCCG--GUGGCG----------CCGCaa-----CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 88976 0.72 0.445775
Target:  5'- uGGUGGCCACCuGgGGCGcc-UUGACGCc -3'
miRNA:   3'- -CCGCCGGUGG-CgCCGCaacGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 29976 0.72 0.452524
Target:  5'- uGGCGGCgGCgGCGGCGgcagugguaucGCCaGAgGCu -3'
miRNA:   3'- -CCGCCGgUGgCGCCGCaa---------CGG-CUgCG- -5'
15867 5' -62.2 NC_004065.1 + 224388 0.71 0.471366
Target:  5'- uGGCGGCguuCCGuCGGCGUcaCCGugGUa -3'
miRNA:   3'- -CCGCCGgu-GGC-GCCGCAacGGCugCG- -5'
15867 5' -62.2 NC_004065.1 + 56617 0.72 0.420978
Target:  5'- aGGCGGCCGCgGauGUGgaUGCgGugGCa -3'
miRNA:   3'- -CCGCCGGUGgCgcCGCa-ACGgCugCG- -5'
15867 5' -62.2 NC_004065.1 + 143117 0.72 0.4129
Target:  5'- cGCGcGCCGCCGagGGCGagaCCGGCGCc -3'
miRNA:   3'- cCGC-CGGUGGCg-CCGCaacGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 150924 0.73 0.389248
Target:  5'- cGGCGGCUcCgGCGG-GUUGUCGAgGUa -3'
miRNA:   3'- -CCGCCGGuGgCGCCgCAACGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 168561 0.73 0.389248
Target:  5'- aGCGGCgGCgGCGGCGacaGCgGGCGUc -3'
miRNA:   3'- cCGCCGgUGgCGCCGCaa-CGgCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 68158 0.73 0.389248
Target:  5'- cGCGGUgAUCGCGGCGgcgcGCgCGACGg -3'
miRNA:   3'- cCGCCGgUGGCGCCGCaa--CG-GCUGCg -5'
15867 5' -62.2 NC_004065.1 + 163383 0.73 0.397033
Target:  5'- gGGCGcCCACCGCGcCGaaGCCGACGa -3'
miRNA:   3'- -CCGCcGGUGGCGCcGCaaCGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 90367 0.73 0.397817
Target:  5'- aGCGGCCGCCGCacGCGccgcacagcuuggaGCCGGCGUu -3'
miRNA:   3'- cCGCCGGUGGCGc-CGCaa------------CGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 70480 0.72 0.404917
Target:  5'- cGGCGGCguucagggaCACCGUgaaGGCGaUGgCGGCGCc -3'
miRNA:   3'- -CCGCCG---------GUGGCG---CCGCaACgGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 35623 0.72 0.404917
Target:  5'- cGGCGGCgGCgGCGGCGgggaUGUcauCGGCGa -3'
miRNA:   3'- -CCGCCGgUGgCGCCGCa---ACG---GCUGCg -5'
15867 5' -62.2 NC_004065.1 + 70115 0.72 0.4129
Target:  5'- cGGCaGCgGCgGCGGCGgcGCCGAuCGa -3'
miRNA:   3'- -CCGcCGgUGgCGCCGCaaCGGCU-GCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.