miRNA display CGI


Results 1 - 20 of 386 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 66603 1.12 0.000888
Target:  5'- cGGCGGCCACCGCGGCGUUGCCGACGCu -3'
miRNA:   3'- -CCGCCGGUGGCGCCGCAACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 102049 0.75 0.284959
Target:  5'- cGCGGCgGCCG-GGCGUUagcGCCGAagaGCa -3'
miRNA:   3'- cCGCCGgUGGCgCCGCAA---CGGCUg--CG- -5'
15867 5' -62.2 NC_004065.1 + 146598 0.74 0.319765
Target:  5'- gGGUGGCCaucgggGCCGuCGGCGggGCCGugucuucgguggugaACGCc -3'
miRNA:   3'- -CCGCCGG------UGGC-GCCGCaaCGGC---------------UGCG- -5'
15867 5' -62.2 NC_004065.1 + 203998 0.66 0.791179
Target:  5'- uGCGaGCCGCUgGUGGaCGacGCCGAgGCc -3'
miRNA:   3'- cCGC-CGGUGG-CGCC-GCaaCGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 35210 0.82 0.113131
Target:  5'- uGGCGGCCACCGCcacGGCGUUcagggGCuCGACGa -3'
miRNA:   3'- -CCGCCGGUGGCG---CCGCAA-----CG-GCUGCg -5'
15867 5' -62.2 NC_004065.1 + 65188 0.79 0.163317
Target:  5'- cGGCGGCCAUCGCGGUuuccuccucggaaacGgccagagUGCCGGCGg -3'
miRNA:   3'- -CCGCCGGUGGCGCCG---------------Ca------ACGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 152047 0.79 0.169552
Target:  5'- gGGCGGCuCGCCGCGGCcagcgucucGggGCuCGACGUc -3'
miRNA:   3'- -CCGCCG-GUGGCGCCG---------CaaCG-GCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 198033 0.78 0.198025
Target:  5'- cGCGGUCGCCgGCGGUuccaaggggauggaGUUGCgGACGCa -3'
miRNA:   3'- cCGCCGGUGG-CGCCG--------------CAACGgCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 130058 0.77 0.233182
Target:  5'- cGCGGCCcgagcacGCCGCGGCGgugGUCGACu- -3'
miRNA:   3'- cCGCCGG-------UGGCGCCGCaa-CGGCUGcg -5'
15867 5' -62.2 NC_004065.1 + 119851 0.75 0.281281
Target:  5'- cGCGGCCGCCGCagaGGUcggggaagacGUcccugagcgagaacuUGCCGGCGCg -3'
miRNA:   3'- cCGCCGGUGGCG---CCG----------CA---------------ACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 79631 0.76 0.272848
Target:  5'- cGCGGaCGCUGCgGGCGUgcgUGUCGGCGCu -3'
miRNA:   3'- cCGCCgGUGGCG-CCGCA---ACGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 120412 0.77 0.228515
Target:  5'- uGGUGGgCACCGCGGCccgGggGUCGAgCGCg -3'
miRNA:   3'- -CCGCCgGUGGCGCCG---CaaCGGCU-GCG- -5'
15867 5' -62.2 NC_004065.1 + 153641 0.87 0.046507
Target:  5'- cGGCGGCgAgcucauCCGCGGCGgcGCCGGCGCg -3'
miRNA:   3'- -CCGCCGgU------GGCGCCGCaaCGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 151357 0.75 0.278851
Target:  5'- -uCGGgCGCCGCGGCGccgGCCGcuGCGCu -3'
miRNA:   3'- ccGCCgGUGGCGCCGCaa-CGGC--UGCG- -5'
15867 5' -62.2 NC_004065.1 + 78878 0.84 0.084434
Target:  5'- cGCGGUCGCCgacgaucaucGCGGCGUUGCCGcCGCc -3'
miRNA:   3'- cCGCCGGUGG----------CGCCGCAACGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 120115 0.77 0.220414
Target:  5'- cGGCGGCCGCgGCGGaCGagccgggaccccCCGACGCg -3'
miRNA:   3'- -CCGCCGGUGgCGCC-GCaac---------GGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 184483 0.75 0.278851
Target:  5'- gGGCGGCUgccgccgccGCCGCGGCGccgGgUGGCGUa -3'
miRNA:   3'- -CCGCCGG---------UGGCGCCGCaa-CgGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 89044 0.74 0.317081
Target:  5'- cGGUGGCCACCa-GGaUGUUGCaguaGACGCu -3'
miRNA:   3'- -CCGCCGGUGGcgCC-GCAACGg---CUGCG- -5'
15867 5' -62.2 NC_004065.1 + 208026 0.83 0.093132
Target:  5'- cGGCGGCgaugACCGuCGGCGUgGCCGugGCg -3'
miRNA:   3'- -CCGCCGg---UGGC-GCCGCAaCGGCugCG- -5'
15867 5' -62.2 NC_004065.1 + 108808 0.79 0.169552
Target:  5'- uGGCGGCCguucaGCCGCGGCaacagGCUGACGg -3'
miRNA:   3'- -CCGCCGG-----UGGCGCCGcaa--CGGCUGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.