miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15867 5' -62.2 NC_004065.1 + 105848 0.73 0.366502
Target:  5'- cGGCGGCCugCGCGcacacccuggaGuCGgUGuuGACGCu -3'
miRNA:   3'- -CCGCCGGugGCGC-----------C-GCaACggCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 146598 0.74 0.319765
Target:  5'- gGGUGGCCaucgggGCCGuCGGCGggGCCGugucuucgguggugaACGCc -3'
miRNA:   3'- -CCGCCGG------UGGC-GCCGCaaCGGC---------------UGCG- -5'
15867 5' -62.2 NC_004065.1 + 120412 0.77 0.228515
Target:  5'- uGGUGGgCACCGCGGCccgGggGUCGAgCGCg -3'
miRNA:   3'- -CCGCCgGUGGCGCCG---CaaCGGCU-GCG- -5'
15867 5' -62.2 NC_004065.1 + 208026 0.83 0.093132
Target:  5'- cGGCGGCgaugACCGuCGGCGUgGCCGugGCg -3'
miRNA:   3'- -CCGCCGg---UGGC-GCCGCAaCGGCugCG- -5'
15867 5' -62.2 NC_004065.1 + 143276 0.72 0.420978
Target:  5'- gGGCGGCaGCUucaagggccgagGCGGCGUcggggGCCGGgGCa -3'
miRNA:   3'- -CCGCCGgUGG------------CGCCGCAa----CGGCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 28471 0.73 0.381564
Target:  5'- aGCGGCgaGuuGUGGCGUcugGCCGACaGCg -3'
miRNA:   3'- cCGCCGg-UggCGCCGCAa--CGGCUG-CG- -5'
15867 5' -62.2 NC_004065.1 + 102049 0.75 0.284959
Target:  5'- cGCGGCgGCCG-GGCGUUagcGCCGAagaGCa -3'
miRNA:   3'- cCGCCGgUGGCgCCGCAA---CGGCUg--CG- -5'
15867 5' -62.2 NC_004065.1 + 78878 0.84 0.084434
Target:  5'- cGCGGUCGCCgacgaucaucGCGGCGUUGCCGcCGCc -3'
miRNA:   3'- cCGCCGGUGG----------CGCCGCAACGGCuGCG- -5'
15867 5' -62.2 NC_004065.1 + 80797 0.73 0.373982
Target:  5'- cGGCGGCgGCgGCGGCGgcaGCgGGaGCa -3'
miRNA:   3'- -CCGCCGgUGgCGCCGCaa-CGgCUgCG- -5'
15867 5' -62.2 NC_004065.1 + 153641 0.87 0.046507
Target:  5'- cGGCGGCgAgcucauCCGCGGCGgcGCCGGCGCg -3'
miRNA:   3'- -CCGCCGgU------GGCGCCGCaaCGGCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 89044 0.74 0.317081
Target:  5'- cGGUGGCCACCa-GGaUGUUGCaguaGACGCu -3'
miRNA:   3'- -CCGCCGGUGGcgCC-GCAACGg---CUGCG- -5'
15867 5' -62.2 NC_004065.1 + 167415 0.73 0.366502
Target:  5'- cGCGGCUgcuGCCGcCGGCGgggGCggCGGCGCu -3'
miRNA:   3'- cCGCCGG---UGGC-GCCGCaa-CG--GCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 151357 0.75 0.278851
Target:  5'- -uCGGgCGCCGCGGCGccgGCCGcuGCGCu -3'
miRNA:   3'- ccGCCgGUGGCGCCGCaa-CGGC--UGCG- -5'
15867 5' -62.2 NC_004065.1 + 130058 0.77 0.233182
Target:  5'- cGCGGCCcgagcacGCCGCGGCGgugGUCGACu- -3'
miRNA:   3'- cCGCCGG-------UGGCGCCGCaa-CGGCUGcg -5'
15867 5' -62.2 NC_004065.1 + 152047 0.79 0.169552
Target:  5'- gGGCGGCuCGCCGCGGCcagcgucucGggGCuCGACGUc -3'
miRNA:   3'- -CCGCCG-GUGGCGCCG---------CaaCG-GCUGCG- -5'
15867 5' -62.2 NC_004065.1 + 35210 0.82 0.113131
Target:  5'- uGGCGGCCACCGCcacGGCGUUcagggGCuCGACGa -3'
miRNA:   3'- -CCGCCGGUGGCG---CCGCAA-----CG-GCUGCg -5'
15867 5' -62.2 NC_004065.1 + 159747 0.72 0.445775
Target:  5'- --aGGCCGCCGCGGgGUUGCgccaGuucuuuCGCa -3'
miRNA:   3'- ccgCCGGUGGCGCCgCAACGg---Cu-----GCG- -5'
15867 5' -62.2 NC_004065.1 + 159277 0.72 0.420978
Target:  5'- uGGUGGCCGCCgaGCGGaUGaUGCCGuucaGCg -3'
miRNA:   3'- -CCGCCGGUGG--CGCC-GCaACGGCug--CG- -5'
15867 5' -62.2 NC_004065.1 + 175922 0.73 0.39235
Target:  5'- cGCGGCgaugACgGCGGCGUauauggcucuggcucUGCCGACGg -3'
miRNA:   3'- cCGCCGg---UGgCGCCGCA---------------ACGGCUGCg -5'
15867 5' -62.2 NC_004065.1 + 99939 0.73 0.381564
Target:  5'- cGcCGGaCCGCCGCGGCGgcgGCUGcUGCu -3'
miRNA:   3'- cC-GCC-GGUGGCGCCGCaa-CGGCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.