Results 41 - 60 of 386 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15867 | 5' | -62.2 | NC_004065.1 | + | 141587 | 0.73 | 0.397033 |
Target: 5'- aGGCGaccGCCACCaacgcgacgGCGGCGggcuccgcUGCCGGCGg -3' miRNA: 3'- -CCGC---CGGUGG---------CGCCGCa-------ACGGCUGCg -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 102049 | 0.75 | 0.284959 |
Target: 5'- cGCGGCgGCCG-GGCGUUagcGCCGAagaGCa -3' miRNA: 3'- cCGCCGgUGGCgCCGCAA---CGGCUg--CG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 78878 | 0.84 | 0.084434 |
Target: 5'- cGCGGUCGCCgacgaucaucGCGGCGUUGCCGcCGCc -3' miRNA: 3'- cCGCCGGUGG----------CGCCGCAACGGCuGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 104895 | 0.73 | 0.39625 |
Target: 5'- cGCGGCUgggcgacGgCGCGGUGgUGCCGGCGg -3' miRNA: 3'- cCGCCGG-------UgGCGCCGCaACGGCUGCg -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 153641 | 0.87 | 0.046507 |
Target: 5'- cGGCGGCgAgcucauCCGCGGCGgcGCCGGCGCg -3' miRNA: 3'- -CCGCCGgU------GGCGCCGCaaCGGCUGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 187029 | 0.71 | 0.497681 |
Target: 5'- uGGCGGCgG-CGCGGCGUcugaGgUGAUGCg -3' miRNA: 3'- -CCGCCGgUgGCGCCGCAa---CgGCUGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 35210 | 0.82 | 0.113131 |
Target: 5'- uGGCGGCCACCGCcacGGCGUUcagggGCuCGACGa -3' miRNA: 3'- -CCGCCGGUGGCG---CCGCAA-----CG-GCUGCg -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 138821 | 0.71 | 0.495019 |
Target: 5'- cGGCGGCgccgaugccgcgcaCGCCGaCGGCGcuuccgcgGCCGuCGCc -3' miRNA: 3'- -CCGCCG--------------GUGGC-GCCGCaa------CGGCuGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 56143 | 0.71 | 0.480061 |
Target: 5'- cGGCGGCgGCCcacacacaCGGCGUga-CGGCGCc -3' miRNA: 3'- -CCGCCGgUGGc-------GCCGCAacgGCUGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 111851 | 0.72 | 0.45422 |
Target: 5'- cGGCGGCaGCCGUGaCGgccGCCGcCGCg -3' miRNA: 3'- -CCGCCGgUGGCGCcGCaa-CGGCuGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 79550 | 0.72 | 0.45422 |
Target: 5'- aGGCGGUCGauGCGGCGcaGC-GGCGCu -3' miRNA: 3'- -CCGCCGGUggCGCCGCaaCGgCUGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 159747 | 0.72 | 0.445775 |
Target: 5'- --aGGCCGCCGCGGgGUUGCgccaGuucuuuCGCa -3' miRNA: 3'- ccgCCGGUGGCGCCgCAACGg---Cu-----GCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 159277 | 0.72 | 0.420978 |
Target: 5'- uGGUGGCCGCCgaGCGGaUGaUGCCGuucaGCg -3' miRNA: 3'- -CCGCCGGUGG--CGCC-GCaACGGCug--CG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 152816 | 0.73 | 0.388475 |
Target: 5'- cGUGGCCAUCGCcgugcggGGCGccGCCG-CGCa -3' miRNA: 3'- cCGCCGGUGGCG-------CCGCaaCGGCuGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 80797 | 0.73 | 0.373982 |
Target: 5'- cGGCGGCgGCgGCGGCGgcaGCgGGaGCa -3' miRNA: 3'- -CCGCCGgUGgCGCCGCaa-CGgCUgCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 105848 | 0.73 | 0.366502 |
Target: 5'- cGGCGGCCugCGCGcacacccuggaGuCGgUGuuGACGCu -3' miRNA: 3'- -CCGCCGGugGCGC-----------C-GCaACggCUGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 146598 | 0.74 | 0.319765 |
Target: 5'- gGGUGGCCaucgggGCCGuCGGCGggGCCGugucuucgguggugaACGCc -3' miRNA: 3'- -CCGCCGG------UGGC-GCCGCaaCGGC---------------UGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 151357 | 0.75 | 0.278851 |
Target: 5'- -uCGGgCGCCGCGGCGccgGCCGcuGCGCu -3' miRNA: 3'- ccGCCgGUGGCGCCGCaa-CGGC--UGCG- -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 130058 | 0.77 | 0.233182 |
Target: 5'- cGCGGCCcgagcacGCCGCGGCGgugGUCGACu- -3' miRNA: 3'- cCGCCGG-------UGGCGCCGCaa-CGGCUGcg -5' |
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15867 | 5' | -62.2 | NC_004065.1 | + | 152047 | 0.79 | 0.169552 |
Target: 5'- gGGCGGCuCGCCGCGGCcagcgucucGggGCuCGACGUc -3' miRNA: 3'- -CCGCCG-GUGGCGCCG---------CaaCG-GCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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