miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15868 3' -50.7 NC_004065.1 + 134018 0.66 0.999265
Target:  5'- cGGUAGugGgaaGUgCGAUggCGGCGGa -3'
miRNA:   3'- -CCAUCugCaaaCGaGCUAgaGCCGUC- -5'
15868 3' -50.7 NC_004065.1 + 21088 0.66 0.999265
Target:  5'- gGGgacauGACGUacGCUCGA--UCGGCAc -3'
miRNA:   3'- -CCau---CUGCAaaCGAGCUagAGCCGUc -5'
15868 3' -50.7 NC_004065.1 + 79039 0.66 0.999103
Target:  5'- cGGUcaACGauccGCUCGAUCUUcgaGGCGGa -3'
miRNA:   3'- -CCAucUGCaaa-CGAGCUAGAG---CCGUC- -5'
15868 3' -50.7 NC_004065.1 + 118504 0.66 0.998688
Target:  5'- cGGUGGGgccUGUc-GCUCGggUUCGGCAu -3'
miRNA:   3'- -CCAUCU---GCAaaCGAGCuaGAGCCGUc -5'
15868 3' -50.7 NC_004065.1 + 83945 0.66 0.998664
Target:  5'- uGUAGGCGUgcgUGUUgCGGUagcggcacucgucCUCGGCAu -3'
miRNA:   3'- cCAUCUGCAa--ACGA-GCUA-------------GAGCCGUc -5'
15868 3' -50.7 NC_004065.1 + 149911 0.66 0.998426
Target:  5'- cGGuUGGAUGagggGCgcgCGG-CUCGGCAGg -3'
miRNA:   3'- -CC-AUCUGCaaa-CGa--GCUaGAGCCGUC- -5'
15868 3' -50.7 NC_004065.1 + 77550 0.67 0.99812
Target:  5'- --aAGAgGUccuuUUGCagGAUCUCGGCGa -3'
miRNA:   3'- ccaUCUgCA----AACGagCUAGAGCCGUc -5'
15868 3' -50.7 NC_004065.1 + 212174 0.67 0.996354
Target:  5'- --aAGcuCGgcUGCUCGA-CUCGGCGGc -3'
miRNA:   3'- ccaUCu-GCaaACGAGCUaGAGCCGUC- -5'
15868 3' -50.7 NC_004065.1 + 21541 0.67 0.996354
Target:  5'- gGGUuGAUGUagUGUUCGAUCUC-GCAc -3'
miRNA:   3'- -CCAuCUGCAa-ACGAGCUAGAGcCGUc -5'
15868 3' -50.7 NC_004065.1 + 169581 0.68 0.995745
Target:  5'- cGUcGACGUggucCUCGGUCUCGGUu- -3'
miRNA:   3'- cCAuCUGCAaac-GAGCUAGAGCCGuc -5'
15868 3' -50.7 NC_004065.1 + 189441 0.68 0.995745
Target:  5'- uGGUAaACGgcagcggcaugUUGUUgGGUCUCGGCAa -3'
miRNA:   3'- -CCAUcUGCa----------AACGAgCUAGAGCCGUc -5'
15868 3' -50.7 NC_004065.1 + 55651 0.68 0.995056
Target:  5'- --aAGACGg--GCUCGAg-UCGGCAc -3'
miRNA:   3'- ccaUCUGCaaaCGAGCUagAGCCGUc -5'
15868 3' -50.7 NC_004065.1 + 197889 0.68 0.993407
Target:  5'- --cAGGCGUagUGCUCGGccaugcaaUCGGCGGg -3'
miRNA:   3'- ccaUCUGCAa-ACGAGCUag------AGCCGUC- -5'
15868 3' -50.7 NC_004065.1 + 222407 0.68 0.992431
Target:  5'- cGUGGACGg--GUcgacauUCGAUCgUCGGCAa -3'
miRNA:   3'- cCAUCUGCaaaCG------AGCUAG-AGCCGUc -5'
15868 3' -50.7 NC_004065.1 + 185468 0.68 0.992431
Target:  5'- aGGUGGugGUggUGCg-GGUCgggaGGCAGc -3'
miRNA:   3'- -CCAUCugCAa-ACGagCUAGag--CCGUC- -5'
15868 3' -50.7 NC_004065.1 + 165974 0.69 0.990135
Target:  5'- cGGUGGACGUc-GCUCu-UCUCGGgGu -3'
miRNA:   3'- -CCAUCUGCAaaCGAGcuAGAGCCgUc -5'
15868 3' -50.7 NC_004065.1 + 19637 0.7 0.979906
Target:  5'- aGGUGGaaGCGUg-GCUCGAUCUcagagaccugaaCGGUAGu -3'
miRNA:   3'- -CCAUC--UGCAaaCGAGCUAGA------------GCCGUC- -5'
15868 3' -50.7 NC_004065.1 + 229671 0.71 0.972508
Target:  5'- aGGUGGGCGUcgggGCgcgCGuccgCUCGGCGa -3'
miRNA:   3'- -CCAUCUGCAaa--CGa--GCua--GAGCCGUc -5'
15868 3' -50.7 NC_004065.1 + 127813 0.71 0.95983
Target:  5'- ----cACGUUUGgauuucugacaCUCGAUCUCGGCGGc -3'
miRNA:   3'- ccaucUGCAAAC-----------GAGCUAGAGCCGUC- -5'
15868 3' -50.7 NC_004065.1 + 165353 0.72 0.94801
Target:  5'- uGGUGGAUGUcgguggUGCa-GAUCUCGGcCAGc -3'
miRNA:   3'- -CCAUCUGCAa-----ACGagCUAGAGCC-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.