Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15869 | 3' | -56.4 | NC_004065.1 | + | 29858 | 0.66 | 0.959035 |
Target: 5'- aUCCGCcaUCCCUugCGGAUCuuGACga-ACu -3' miRNA: 3'- -GGGCG--AGGGA--GUCUAGggCUGaagUG- -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 204704 | 0.66 | 0.955421 |
Target: 5'- gCCGCaggaCCCUgGGAUCgCUGugUUCGu -3' miRNA: 3'- gGGCGa---GGGAgUCUAG-GGCugAAGUg -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 151409 | 0.66 | 0.951596 |
Target: 5'- aCCgCGUUCaCCUCAGGcggCgCGACgacgUCGCg -3' miRNA: 3'- -GG-GCGAG-GGAGUCUa--GgGCUGa---AGUG- -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 6099 | 0.66 | 0.950007 |
Target: 5'- aCCCGgUCuCCUCcugggcugccgcuGGUCUCGGcCUUCGCg -3' miRNA: 3'- -GGGCgAG-GGAGu------------CUAGGGCU-GAAGUG- -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 186322 | 0.66 | 0.947557 |
Target: 5'- gCCGCUUcguaCCUCAcGAUCuUCGACggCGCg -3' miRNA: 3'- gGGCGAG----GGAGU-CUAG-GGCUGaaGUG- -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 14706 | 0.66 | 0.943302 |
Target: 5'- aCCGCcaCCCaUCAGAUCCaCGcCgUCACc -3' miRNA: 3'- gGGCGa-GGG-AGUCUAGG-GCuGaAGUG- -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 32219 | 0.66 | 0.943302 |
Target: 5'- aCCCGCUCCaccacaaaCUCGGAgccgUCgGACU-CGCc -3' miRNA: 3'- -GGGCGAGG--------GAGUCUa---GGgCUGAaGUG- -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 80135 | 0.66 | 0.943302 |
Target: 5'- aCCgGCaCCCUCGGGUUCgGGCg-CGCa -3' miRNA: 3'- -GGgCGaGGGAGUCUAGGgCUGaaGUG- -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 95476 | 0.66 | 0.943302 |
Target: 5'- gCCCGUccUCCCUCuuccUCCGACUgacuuugaUCACg -3' miRNA: 3'- -GGGCG--AGGGAGucuaGGGCUGA--------AGUG- -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 94843 | 0.67 | 0.940644 |
Target: 5'- uUCCGCUUaggggcugucaaucaUCUUAGGUCCCGAagagcccUCACa -3' miRNA: 3'- -GGGCGAG---------------GGAGUCUAGGGCUga-----AGUG- -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 113109 | 0.67 | 0.938828 |
Target: 5'- aCCGuCUCCCUCAGGaucagcagCUCGAUccCGCg -3' miRNA: 3'- gGGC-GAGGGAGUCUa-------GGGCUGaaGUG- -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 77707 | 0.67 | 0.938828 |
Target: 5'- cCCCGUguUCCUgucgCcGAUCCCGACguucCGCc -3' miRNA: 3'- -GGGCG--AGGGa---GuCUAGGGCUGaa--GUG- -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 225411 | 0.67 | 0.934133 |
Target: 5'- gCCGCUCCCUCucgaaGGGUCgUGGCg---- -3' miRNA: 3'- gGGCGAGGGAG-----UCUAGgGCUGaagug -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 143198 | 0.67 | 0.93121 |
Target: 5'- cCCCGCUCuaccuagaucuguuCCUCAaggccgcguucgccGcgCCCGuCUUCGCu -3' miRNA: 3'- -GGGCGAG--------------GGAGU--------------CuaGGGCuGAAGUG- -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 109081 | 0.67 | 0.929217 |
Target: 5'- cCCCGCUaCC-CGGA-CCCGACcgugugCACg -3' miRNA: 3'- -GGGCGAgGGaGUCUaGGGCUGaa----GUG- -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 142881 | 0.67 | 0.924078 |
Target: 5'- cCCCGgUCUC-CAGAgcuUCgCCGAUUUCAUc -3' miRNA: 3'- -GGGCgAGGGaGUCU---AG-GGCUGAAGUG- -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 18234 | 0.67 | 0.923552 |
Target: 5'- uCCCGCgCCuCUcCGGAgucgucUCCCGACUggaggcgUCGCu -3' miRNA: 3'- -GGGCGaGG-GA-GUCU------AGGGCUGA-------AGUG- -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 125969 | 0.67 | 0.918717 |
Target: 5'- uCCCGCUCCagCGGGUCCUGcACgUCu- -3' miRNA: 3'- -GGGCGAGGgaGUCUAGGGC-UGaAGug -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 223762 | 0.67 | 0.918717 |
Target: 5'- gUCgGCUCCCUCucGUCCCcGCcgCACg -3' miRNA: 3'- -GGgCGAGGGAGucUAGGGcUGaaGUG- -5' |
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15869 | 3' | -56.4 | NC_004065.1 | + | 79109 | 0.67 | 0.913135 |
Target: 5'- aCCCGCcggagccgCCgUCGGAccccuuguUCCCGACggacucgUCGCu -3' miRNA: 3'- -GGGCGa-------GGgAGUCU--------AGGGCUGa------AGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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