miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15869 3' -56.4 NC_004065.1 + 94029 0.68 0.901311
Target:  5'- gUUGCUCCCUgccCAGGUCCCGG-UUCcCg -3'
miRNA:   3'- gGGCGAGGGA---GUCUAGGGCUgAAGuG- -5'
15869 3' -56.4 NC_004065.1 + 45136 0.68 0.901311
Target:  5'- gCCCGCUCCCgauccucucUCGu-UCCCGGCguccCGCc -3'
miRNA:   3'- -GGGCGAGGG---------AGUcuAGGGCUGaa--GUG- -5'
15869 3' -56.4 NC_004065.1 + 113680 0.68 0.881962
Target:  5'- uCUCGCUCUC-CAGcuucucUCCCGACgccgUCGCc -3'
miRNA:   3'- -GGGCGAGGGaGUCu-----AGGGCUGa---AGUG- -5'
15869 3' -56.4 NC_004065.1 + 80995 0.68 0.875095
Target:  5'- gCCCGCUCCCgaggUCAGcccgagGUUCCGA--UCGCc -3'
miRNA:   3'- -GGGCGAGGG----AGUC------UAGGGCUgaAGUG- -5'
15869 3' -56.4 NC_004065.1 + 93681 0.68 0.875094
Target:  5'- cUCgGCUCCC-CAGcuUCCCGGCUacccuccucggcUCACc -3'
miRNA:   3'- -GGgCGAGGGaGUCu-AGGGCUGA------------AGUG- -5'
15869 3' -56.4 NC_004065.1 + 38735 0.69 0.868026
Target:  5'- uCCUGCUCcgCCUCAGAgagggcCCCGAagugCACu -3'
miRNA:   3'- -GGGCGAG--GGAGUCUa-----GGGCUgaa-GUG- -5'
15869 3' -56.4 NC_004065.1 + 178379 0.69 0.860759
Target:  5'- aCCCGCgCUCUCcuGGAUCCgacgCGACUUCu- -3'
miRNA:   3'- -GGGCGaGGGAG--UCUAGG----GCUGAAGug -5'
15869 3' -56.4 NC_004065.1 + 110925 0.69 0.845657
Target:  5'- aCCGCUCCCggugaaCGGGUUCCG-CguggUCAUg -3'
miRNA:   3'- gGGCGAGGGa-----GUCUAGGGCuGa---AGUG- -5'
15869 3' -56.4 NC_004065.1 + 102377 0.7 0.829835
Target:  5'- uCCCGCcgCCCUCGGcgCCgcagCGGCagCGCg -3'
miRNA:   3'- -GGGCGa-GGGAGUCuaGG----GCUGaaGUG- -5'
15869 3' -56.4 NC_004065.1 + 93924 0.7 0.829835
Target:  5'- cCCCGCUucauugcaCCCUgccCAGGUCCCGAUUg--- -3'
miRNA:   3'- -GGGCGA--------GGGA---GUCUAGGGCUGAagug -5'
15869 3' -56.4 NC_004065.1 + 98976 0.7 0.813344
Target:  5'- aCCGCgccgCUCUUAGuAUCCCGGCgcCGCc -3'
miRNA:   3'- gGGCGa---GGGAGUC-UAGGGCUGaaGUG- -5'
15869 3' -56.4 NC_004065.1 + 93635 0.7 0.78748
Target:  5'- cCCCgGCUaccgaCCUCGGAuccccgcacccuUCCCGGCUUCuCg -3'
miRNA:   3'- -GGG-CGAg----GGAGUCU------------AGGGCUGAAGuG- -5'
15869 3' -56.4 NC_004065.1 + 179161 0.7 0.786597
Target:  5'- gCCCGUcgaucucUCCgUCAGAggccccgcgCCCGGCgUUCACg -3'
miRNA:   3'- -GGGCG-------AGGgAGUCUa--------GGGCUG-AAGUG- -5'
15869 3' -56.4 NC_004065.1 + 12659 0.71 0.760449
Target:  5'- cCCCGCUCCUcgcugaugcuUCuGAUCCgGACaUCAg -3'
miRNA:   3'- -GGGCGAGGG----------AGuCUAGGgCUGaAGUg -5'
15869 3' -56.4 NC_004065.1 + 186834 0.72 0.722966
Target:  5'- aCCCGUUCCCccgaGGAUCCCGAgUgugagauguuuaUCAUg -3'
miRNA:   3'- -GGGCGAGGGag--UCUAGGGCUgA------------AGUG- -5'
15869 3' -56.4 NC_004065.1 + 8032 0.73 0.664728
Target:  5'- cCCaCGCgguaucgUCUUCGGGUCCCGACgUCGCc -3'
miRNA:   3'- -GG-GCGa------GGGAGUCUAGGGCUGaAGUG- -5'
15869 3' -56.4 NC_004065.1 + 164191 0.73 0.664727
Target:  5'- aCUCGCgggCCCUCauGGAUCUCGcCUUUACg -3'
miRNA:   3'- -GGGCGa--GGGAG--UCUAGGGCuGAAGUG- -5'
15869 3' -56.4 NC_004065.1 + 60250 0.73 0.635171
Target:  5'- uCCCGCUCCCaaacccgucgCGGAUUCCGAgCUcaUCAUa -3'
miRNA:   3'- -GGGCGAGGGa---------GUCUAGGGCU-GA--AGUG- -5'
15869 3' -56.4 NC_004065.1 + 66733 0.74 0.605592
Target:  5'- gCCCGUgCCgUCGGAcCCCGGCggcgUCGCg -3'
miRNA:   3'- -GGGCGaGGgAGUCUaGGGCUGa---AGUG- -5'
15869 3' -56.4 NC_004065.1 + 65786 1.1 0.003801
Target:  5'- gCCCGCUCCCUCAGAUCCCGACUUCACc -3'
miRNA:   3'- -GGGCGAGGGAGUCUAGGGCUGAAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.